Analysis of interatomic Contacts of Structural Units in PDB entry:
6FNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FNP entry

There are 6 chains in PDB entry 6FNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 7	ALA 175
B	GLY 1	SER 280
C	MET 1	LYS 282
D	ILE 6	LYS 264
E	GLN 8	PHE 157
F	GLY 1	LYS 179

There are 95 helices in PDB entry 6FNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	46	Right-handed 310
Helix 2	AA2	A	119	128	Right-handed alpha
Helix 3	AA3	A	135	140	Right-handed alpha
Helix 4	AA4	A	142	149	Right-handed alpha
Helix 5	AA5	A	163	173	Right-handed alpha
Helix 6	AA6	B	102	107	Right-handed alpha
Helix 7	AA7	B	108	109	Right-handed 310
Helix 8	AA8	B	110	114	Right-handed 310
Helix 9	AA9	B	116	129	Right-handed alpha
Helix 10	AB1	B	147	151	Right-handed 310
Helix 11	AB2	B	154	159	Right-handed alpha
Helix 12	AB3	B	175	183	Right-handed alpha
Helix 13	AB4	B	188	193	Right-handed alpha
Helix 14	AB5	B	203	208	Right-handed alpha
Helix 15	AB6	B	226	231	Right-handed alpha
Helix 16	AB7	B	247	256	Right-handed alpha
Helix 17	AB8	C	45	51	Right-handed alpha
Helix 18	AB9	C	82	87	Right-handed alpha
Helix 19	AC1	C	103	108	Right-handed alpha
Helix 20	AC2	C	120	125	Right-handed alpha
Helix 21	AC3	C	126	131	Right-handed alpha
Helix 22	AC4	C	147	159	Right-handed alpha
Helix 23	AC5	C	186	191	Right-handed alpha
Helix 24	AC6	C	204	206	Right-handed 310
Helix 25	AC7	C	207	212	Right-handed alpha
Helix 26	AC8	C	252	258	Right-handed alpha
Helix 27	AC9	C	269	274	Right-handed alpha
Helix 28	AD1	C	277	282	Right-handed alpha
Helix 29	AD2	D	25	34	Right-handed alpha
Helix 30	AD3	D	43	51	Right-handed alpha
Helix 31	AD4	D	64	68	Right-handed 310
Helix 32	AD5	D	75	80	Right-handed alpha
Helix 33	AD6	D	81	84	Right-handed 310
Helix 34	AD7	D	111	116	Right-handed alpha
Helix 35	AD8	D	120	128	Right-handed alpha
Helix 36	AD9	D	134	142	Right-handed alpha
Helix 37	AE1	D	155	166	Right-handed alpha
Helix 38	AE2	D	166	172	Right-handed alpha
Helix 39	AE3	D	175	181	Right-handed alpha
Helix 40	AE4	D	200	208	Right-handed alpha
Helix 41	AE5	D	208	213	Right-handed alpha
Helix 42	AE6	D	213	218	Right-handed alpha
Helix 43	AE7	D	218	224	Right-handed alpha
Helix 44	AE8	D	246	252	Right-handed alpha
Helix 45	AE9	D	253	261	Right-handed alpha
Helix 46	AF1	E	8	12	Right-handed 310
Helix 47	AF2	E	13	28	Right-handed alpha
Helix 48	AF3	E	59	67	Right-handed alpha
Helix 49	AF4	E	87	92	Right-handed alpha
Helix 50	AF5	E	111	116	Right-handed alpha
Helix 51	AF6	E	142	149	Right-handed alpha
Helix 52	AF7	E	150	155	Right-handed alpha
Helix 53	AF8	F	49	54	Right-handed alpha
Helix 54	AF9	F	102	107	Right-handed alpha
Helix 55	AG1	F	108	113	Right-handed alpha
Helix 56	AG2	F	116	124	Right-handed alpha
Helix 57	AG3	F	128	136	Right-handed 310
Helix 58	AG4	F	152	160	Right-handed alpha
Helix 59	AG5	F	178	194	Right-handed alpha
Helix 60	AG6	F	226	231	Right-handed alpha
Helix 61	AG7	F	245	250	Right-handed alpha
Helix 62	AG8	F	251	256	Right-handed alpha
Helix 63	AG9	F	269	275	Right-handed alpha
Helix 64	AH1	G	48	52	Right-handed 310
Helix 65	AH2	G	80	85	Right-handed alpha
Helix 66	AH3	G	110	114	Right-handed 310
Helix 67	AH4	G	121	124	Right-handed 310
Helix 68	AH5	G	125	130	Right-handed alpha
Helix 69	AH6	G	131	133	Right-handed 310
Helix 70	AH7	G	152	161	Right-handed alpha
Helix 71	AH8	G	177	184	Right-handed alpha
Helix 72	AH9	G	188	193	Right-handed alpha
Helix 73	AI1	G	228	233	Right-handed alpha
Helix 74	AI2	G	237	242	Right-handed alpha
Helix 75	AI3	G	247	253	Right-handed alpha
Helix 76	AI4	G	253	258	Right-handed alpha
Helix 77	AI5	G	273	277	Right-handed 310
Helix 78	AI6	H	25	30	Right-handed alpha
Helix 79	AI7	H	31	36	Right-handed 310
Helix 80	AI8	H	41	46	Right-handed 310
Helix 81	AI9	H	55	59	Right-handed 310
Helix 82	AJ1	H	78	83	Right-handed 310
Helix 83	AJ2	H	103	108	Right-handed alpha
Helix 84	AJ3	H	111	116	Right-handed alpha
Helix 85	AJ4	H	121	129	Right-handed alpha
Helix 86	AJ5	H	131	139	Right-handed alpha
Helix 87	AJ6	H	143	147	Right-handed 310
Helix 88	AJ7	H	158	165	Right-handed alpha
Helix 89	AJ8	H	174	179	Right-handed alpha
Helix 90	AJ9	H	179	184	Right-handed alpha
Helix 91	AK1	H	204	209	Right-handed alpha
Helix 92	AK2	H	211	223	Right-handed alpha
Helix 93	AK3	H	250	255	Right-handed alpha
Helix 94	AK4	H	255	260	Right-handed alpha
Helix 95	AK5	H	261	263	Right-handed 310

There are 11 sheets in PDB entry 6FNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	67	68	anti-parallel
Strand 4	B	73	74	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	215	216	parallel
Strand 3	B	221	222	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	164	167	parallel
Strand 3	B	196	198	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	4	5	anti-parallel
Strand 3	C	64	65	anti-parallel
Strand 4	C	70	71	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	197	198	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	222	225	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	199	first strand
Strand 2	F	36	37	parallel
Strand 3	F	212	213	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	166	167	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	216	first strand
Strand 2	F	221	222	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	30	first strand
Strand 2	G	3	5	anti-parallel
Strand 3	G	64	65	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	89	first strand
Strand 2	G	166	169	parallel
Strand 3	G	198	201	parallel
Strand 4	G	35	38	parallel
Strand 5	G	215	218	parallel
Strand 6	G	223	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FNP