Analysis of interatomic Contacts of Structural Units in PDB entry:
6FNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FNR entry

There are 2 chains in PDB entry 6FNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 321
B
 GLY -1ARG 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6FNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
34 39Right-handed 310
Helix 3
AA3
A
40 41Right-handed 310
Helix 4
AA4
A
43 43Right-handed 310
Helix 5
AA5
A
44 51Right-handed alpha
Helix 6
AA6
A
57 78Right-handed alpha
Helix 7
AA7
A
90 103Right-handed alpha
Helix 8
AA8
A
115 130Right-handed alpha
Helix 9
AA9
A
145 149Right-handed 310
Helix 10
AB1
A
162 167Right-handed 310
Helix 11
AB2
A
168 181Right-handed alpha
Helix 12
AB3
A
198 206Right-handed alpha
Helix 13
AB4
A
211 229Right-handed alpha
Helix 14
AB5
A
233 235Right-handed 310
Helix 15
AB6
A
265 268Right-handed 310
Helix 16
AB7
A
288 299Right-handed alpha
Helix 17
AB8
B
12 28Right-handed alpha
Helix 18
AB9
B
34 39Right-handed 310
Helix 19
AC1
B
40 51Right-handed alpha
Helix 20
AC2
B
57 78Right-handed alpha
Helix 21
AC3
B
90 103Right-handed alpha
Helix 22
AC4
B
115 130Right-handed alpha
Helix 23
AC5
B
145 149Right-handed 310
Helix 24
AC6
B
162 167Right-handed 310
Helix 25
AC7
B
168 182Right-handed alpha
Helix 26
AC8
B
198 206Right-handed alpha
Helix 27
AC9
B
211 229Right-handed alpha
Helix 28
AD1
B
233 235Right-handed 310
Helix 29
AD2
B
265 268Right-handed 310
Helix 30
AD3
B
288 300Right-handed alpha
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There are 6 sheets in PDB entry 6FNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
134 139parallel
Strand 3
A
108 112parallel
Strand 4
A
81 85parallel
Strand 5
A
155 159parallel
Strand 6
A
188 194parallel
Strand 7
A
314 320anti-parallel
Strand 8
A
302 308anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
278 285anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
269 273anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
134 139parallel
Strand 3
B
108 112parallel
Strand 4
B
81 85parallel
Strand 5
B
155 159parallel
Strand 6
B
188 194parallel
Strand 7
B
314 320anti-parallel
Strand 8
B
302 308anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 244first strand
Strand 2
B
249 256anti-parallel
Strand 3
B
278 285anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 264first strand
Strand 2
B
269 273anti-parallel
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