Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FOC entry

There are 8 chains in PDB entry 6FOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 31	UNK 1522
B	GLU 30	PHE 511
C	GLU 30	PHE 511
D	ALA 9	LEU 471
E	ALA 9	LEU 471
F	THR 8	LEU 471
G	THR 4	ALA 304
H	ASP 3	ARG 115

There are117 helices in PDB entry 6FOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	153	160	Right-handed alpha
Helix 2	AA2	A	177	189	Right-handed alpha
Helix 3	AA3	A	212	227	Right-handed alpha
Helix 4	AA4	A	228	230	Right-handed 310
Helix 5	AA5	A	242	264	Right-handed alpha
Helix 6	AA6	A	273	288	Right-handed alpha
Helix 7	AA7	A	293	297	Right-handed 310
Helix 8	AA8	A	298	299	Right-handed 310
Helix 9	AA9	A	300	311	Right-handed alpha
Helix 10	AB1	A	339	349	Right-handed alpha
Helix 11	AB2	A	356	363	Right-handed alpha
Helix 12	AB3	A	377	382	Right-handed 310
Helix 13	AB4	A	383	390	Right-handed alpha
Helix 14	AB5	A	392	404	Right-handed alpha
Helix 15	AB6	A	405	409	Right-handed 310
Helix 16	AB7	A	414	432	Right-handed alpha
Helix 17	AB8	A	440	454	Right-handed alpha
Helix 18	AB9	A	463	478	Right-handed alpha
Helix 19	AC1	A	479	490	Right-handed alpha
Helix 20	AC2	A	493	511	Right-handed alpha
Helix 21	AC3	B	153	160	Right-handed alpha
Helix 22	AC4	B	177	189	Right-handed alpha
Helix 23	AC5	B	212	227	Right-handed alpha
Helix 24	AC6	B	228	230	Right-handed 310
Helix 25	AC7	B	242	264	Right-handed alpha
Helix 26	AC8	B	273	288	Right-handed alpha
Helix 27	AC9	B	293	297	Right-handed 310
Helix 28	AD1	B	298	299	Right-handed 310
Helix 29	AD2	B	300	311	Right-handed alpha
Helix 30	AD3	B	339	347	Right-handed alpha
Helix 31	AD4	B	356	363	Right-handed alpha
Helix 32	AD5	B	377	382	Right-handed 310
Helix 33	AD6	B	383	390	Right-handed alpha
Helix 34	AD7	B	392	406	Right-handed alpha
Helix 35	AD8	B	415	432	Right-handed alpha
Helix 36	AD9	B	440	454	Right-handed alpha
Helix 37	AE1	B	463	478	Right-handed alpha
Helix 38	AE2	B	479	490	Right-handed alpha
Helix 39	AE3	B	493	511	Right-handed alpha
Helix 40	AE4	C	153	160	Right-handed alpha
Helix 41	AE5	C	177	189	Right-handed alpha
Helix 42	AE6	C	212	227	Right-handed alpha
Helix 43	AE7	C	228	230	Right-handed 310
Helix 44	AE8	C	242	264	Right-handed alpha
Helix 45	AE9	C	273	288	Right-handed alpha
Helix 46	AF1	C	293	297	Right-handed 310
Helix 47	AF2	C	298	299	Right-handed 310
Helix 48	AF3	C	300	311	Right-handed alpha
Helix 49	AF4	C	339	349	Right-handed alpha
Helix 50	AF5	C	356	363	Right-handed alpha
Helix 51	AF6	C	377	382	Right-handed 310
Helix 52	AF7	C	383	390	Right-handed alpha
Helix 53	AF8	C	392	409	Right-handed alpha
Helix 54	AF9	C	414	432	Right-handed alpha
Helix 55	AG1	C	440	454	Right-handed alpha
Helix 56	AG2	C	463	478	Right-handed alpha
Helix 57	AG3	C	479	490	Right-handed alpha
Helix 58	AG4	C	493	511	Right-handed alpha
Helix 59	AG5	D	91	95	Right-handed 310
Helix 60	AG6	D	141	148	Right-handed alpha
Helix 61	AG7	D	166	179	Right-handed alpha
Helix 62	AG8	D	193	208	Right-handed alpha
Helix 63	AG9	D	223	244	Right-handed alpha
Helix 64	AH1	D	256	271	Right-handed alpha
Helix 65	AH2	D	275	279	Right-handed 310
Helix 66	AH3	D	282	294	Right-handed alpha
Helix 67	AH4	D	311	314	Right-handed 310
Helix 68	AH5	D	317	324	Right-handed alpha
Helix 69	AH6	D	325	327	Right-handed 310
Helix 70	AH7	D	334	341	Right-handed alpha
Helix 71	AH8	D	357	382	Right-handed alpha
Helix 72	AH9	D	382	389	Right-handed alpha
Helix 73	AI1	D	395	412	Right-handed alpha
Helix 74	AI2	D	431	445	Right-handed alpha
Helix 75	AI3	D	460	471	Right-handed alpha
Helix 76	AI4	E	91	95	Right-handed 310
Helix 77	AI5	E	141	148	Right-handed alpha
Helix 78	AI6	E	166	180	Right-handed alpha
Helix 79	AI7	E	193	208	Right-handed alpha
Helix 80	AI8	E	209	211	Right-handed 310
Helix 81	AI9	E	223	244	Right-handed alpha
Helix 82	AJ1	E	256	271	Right-handed alpha
Helix 83	AJ2	E	275	279	Right-handed 310
Helix 84	AJ3	E	282	294	Right-handed alpha
Helix 85	AJ4	E	310	314	Right-handed 310
Helix 86	AJ5	E	317	324	Right-handed alpha
Helix 87	AJ6	E	325	327	Right-handed 310
Helix 88	AJ7	E	334	341	Right-handed alpha
Helix 89	AJ8	E	362	382	Right-handed alpha
Helix 90	AJ9	E	382	389	Right-handed alpha
Helix 91	AK1	E	395	412	Right-handed alpha
Helix 92	AK2	E	431	445	Right-handed alpha
Helix 93	AK3	E	460	471	Right-handed alpha
Helix 94	AK4	F	91	95	Right-handed 310
Helix 95	AK5	F	141	148	Right-handed alpha
Helix 96	AK6	F	166	179	Right-handed alpha
Helix 97	AK7	F	193	208	Right-handed alpha
Helix 98	AK8	F	223	244	Right-handed alpha
Helix 99	AK9	F	256	271	Right-handed alpha
Helix 100	AL1	F	275	279	Right-handed 310
Helix 101	AL2	F	282	294	Right-handed alpha
Helix 102	AL3	F	311	314	Right-handed 310
Helix 103	AL4	F	317	324	Right-handed alpha
Helix 104	AL5	F	325	327	Right-handed 310
Helix 105	AL6	F	334	341	Right-handed alpha
Helix 106	AL7	F	357	382	Right-handed alpha
Helix 107	AL8	F	382	389	Right-handed alpha
Helix 108	AL9	F	395	412	Right-handed alpha
Helix 109	AM1	F	431	445	Right-handed alpha
Helix 110	AM2	F	460	471	Right-handed alpha
Helix 111	AM3	G	5	57	Right-handed alpha
Helix 112	AM4	G	91	108	Right-handed alpha
Helix 113	AM5	G	120	129	Right-handed alpha
Helix 114	AM6	G	151	163	Right-handed alpha
Helix 115	AM7	G	239	304	Right-handed alpha
Helix 116	AM8	H	93	98	Right-handed alpha
Helix 117	AM9	H	101	115	Right-handed alpha

There are 23 sheets in PDB entry 6FOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	41	46	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	63	69	anti-parallel
Strand 5	A	54	57	anti-parallel
Strand 6	A	90	97	anti-parallel
Strand 7	A	32	38	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	129	131	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	232	237	parallel
Strand 3	A	203	209	parallel
Strand 4	A	267	272	parallel
Strand 5	A	325	331	parallel
Strand 6	A	169	172	parallel
Strand 7	A	351	354	parallel
Strand 8	A	374	375	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	41	46	anti-parallel
Strand 6	B	74	79	anti-parallel
Strand 7	B	63	69	anti-parallel
Strand 8	F	9	16	anti-parallel
Strand 9	F	78	85	anti-parallel
Strand 10	F	34	39	anti-parallel
Strand 11	F	48	56	anti-parallel
Strand 12	F	61	66	anti-parallel
Strand 13	F	19	23	anti-parallel
Strand 14	F	9	16	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	129	131	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	232	237	parallel
Strand 3	B	203	209	parallel
Strand 4	B	267	272	parallel
Strand 5	B	325	331	parallel
Strand 6	B	169	172	parallel
Strand 7	B	351	354	parallel
Strand 8	B	374	375	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	38	first strand
Strand 2	C	41	46	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	54	57	anti-parallel
Strand 6	C	90	97	anti-parallel
Strand 7	C	31	38	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	129	131	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	232	237	parallel
Strand 3	C	203	209	parallel
Strand 4	C	267	272	parallel
Strand 5	C	325	331	parallel
Strand 6	C	169	172	parallel
Strand 7	C	351	354	parallel
Strand 8	C	374	375	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	16	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	48	56	anti-parallel
Strand 5	D	34	39	anti-parallel
Strand 6	D	78	85	anti-parallel
Strand 7	D	10	16	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	117	119	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	213	218	parallel
Strand 3	D	185	190	parallel
Strand 4	D	249	254	parallel
Strand 5	D	302	309	parallel
Strand 6	D	155	160	parallel
Strand 7	D	329	332	parallel
Strand 8	D	352	353	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	150	151	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	16	first strand
Strand 2	E	19	23	anti-parallel
Strand 3	E	61	66	anti-parallel
Strand 4	E	48	56	anti-parallel
Strand 5	E	35	39	anti-parallel
Strand 6	E	78	81	anti-parallel
Strand 7	E	10	16	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	117	119	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	213	218	parallel
Strand 3	E	185	190	parallel
Strand 4	E	249	254	parallel
Strand 5	E	302	306	parallel
Strand 6	E	155	159	parallel
Strand 7	E	329	332	parallel
Strand 8	E	352	353	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	117	119	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	213	218	parallel
Strand 3	F	185	190	parallel
Strand 4	F	249	254	parallel
Strand 5	F	302	309	parallel
Strand 6	F	155	160	parallel
Strand 7	F	329	332	parallel
Strand 8	F	352	353	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	137	first strand
Strand 2	F	150	151	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	190	first strand
Strand 2	G	196	197	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	20	first strand
Strand 2	H	4	10	anti-parallel
Strand 3	H	76	81	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	34	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	41	53	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	34	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	41	53	anti-parallel
Strand 4	H	60	64	anti-parallel
Strand 5	H	84	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOC