Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FOG entry

There are 6 chains in PDB entry 6FOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	GLU 223
G	ALA 6	PRO 222
F	PRO 9	GLU 223
D	PRO 9	GLU 223
B	ALA 6	PRO 222
C	PRO 9	ILE 209

There are 72 helices in PDB entry 6FOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	12	17	Right-handed alpha
Helix 3	AA3	A	27	35	Right-handed alpha
Helix 4	AA4	A	86	92	Right-handed 310
Helix 5	AA5	A	106	116	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed alpha
Helix 7	AA7	A	138	140	Right-handed 310
Helix 8	AA8	A	163	165	Right-handed 310
Helix 9	AA9	A	168	180	Right-handed alpha
Helix 10	AB1	G	9	11	Right-handed 310
Helix 11	AB2	G	12	17	Right-handed alpha
Helix 12	AB3	G	27	34	Right-handed alpha
Helix 13	AB4	G	86	92	Right-handed 310
Helix 14	AB5	G	106	116	Right-handed alpha
Helix 15	AB6	G	119	124	Right-handed alpha
Helix 16	AB7	G	138	140	Right-handed 310
Helix 17	AB8	G	163	165	Right-handed 310
Helix 18	AB9	G	168	180	Right-handed alpha
Helix 19	AC1	F	9	11	Right-handed 310
Helix 20	AC2	F	12	17	Right-handed alpha
Helix 21	AC3	F	27	34	Right-handed alpha
Helix 22	AC4	F	86	92	Right-handed 310
Helix 23	AC5	F	106	116	Right-handed alpha
Helix 24	AC6	F	119	124	Right-handed alpha
Helix 25	AC7	F	138	140	Right-handed 310
Helix 26	AC8	F	163	165	Right-handed 310
Helix 27	AC9	F	168	180	Right-handed alpha
Helix 28	AD1	D	9	11	Right-handed 310
Helix 29	AD2	D	12	17	Right-handed alpha
Helix 30	AD3	D	27	34	Right-handed alpha
Helix 31	AD4	D	86	92	Right-handed 310
Helix 32	AD5	D	106	116	Right-handed alpha
Helix 33	AD6	D	119	124	Right-handed alpha
Helix 34	AD7	D	138	140	Right-handed 310
Helix 35	AD8	D	163	165	Right-handed 310
Helix 36	AD9	D	168	180	Right-handed alpha
Helix 37	AE1	B	9	11	Right-handed 310
Helix 38	AE2	B	12	17	Right-handed alpha
Helix 39	AE3	B	27	34	Right-handed alpha
Helix 40	AE4	B	86	92	Right-handed 310
Helix 41	AE5	B	106	116	Right-handed alpha
Helix 42	AE6	B	119	124	Right-handed alpha
Helix 43	AE7	B	138	140	Right-handed 310
Helix 44	AE8	B	163	165	Right-handed 310
Helix 45	AE9	B	168	180	Right-handed alpha
Helix 46	AF1	C	9	11	Right-handed 310
Helix 47	AF2	C	12	17	Right-handed alpha
Helix 48	AF3	C	27	34	Right-handed alpha
Helix 49	AF4	C	86	92	Right-handed 310
Helix 50	AF5	C	106	116	Right-handed alpha
Helix 51	AF6	C	119	124	Right-handed alpha
Helix 52	AF7	C	138	140	Right-handed 310
Helix 53	AF8	C	163	165	Right-handed 310
Helix 54	AF9	C	168	180	Right-handed alpha
Helix 55	AG1	H	9	11	Right-handed 310
Helix 56	AG2	H	12	17	Right-handed alpha
Helix 57	AG3	H	27	34	Right-handed alpha
Helix 58	AG4	H	86	92	Right-handed 310
Helix 59	AG5	H	106	116	Right-handed alpha
Helix 60	AG6	H	119	124	Right-handed alpha
Helix 61	AG7	H	138	140	Right-handed 310
Helix 62	AG8	H	163	165	Right-handed 310
Helix 63	AG9	H	168	180	Right-handed alpha
Helix 64	AH1	E	9	11	Right-handed 310
Helix 65	AH2	E	12	17	Right-handed alpha
Helix 66	AH3	E	27	34	Right-handed alpha
Helix 67	AH4	E	86	92	Right-handed 310
Helix 68	AH5	E	106	116	Right-handed alpha
Helix 69	AH6	E	119	124	Right-handed alpha
Helix 70	AH7	E	138	140	Right-handed 310
Helix 71	AH8	E	163	165	Right-handed 310
Helix 72	AH9	E	168	180	Right-handed alpha

There are 32 sheets in PDB entry 6FOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	187	189	parallel
Strand 4	A	72	78	anti-parallel
Strand 5	A	94	101	anti-parallel
Strand 6	A	135	136	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	129	131	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	213	220	parallel
Strand 3	A	204	209	anti-parallel
Strand 4	A	147	152	anti-parallel
Strand 5	A	155	161	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	68	70	anti-parallel
Strand 3	A	197	199	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	48	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	187	189	parallel
Strand 4	G	72	78	anti-parallel
Strand 5	G	94	101	anti-parallel
Strand 6	G	135	136	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	54	first strand
Strand 2	G	129	131	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	213	220	parallel
Strand 3	G	204	209	anti-parallel
Strand 4	G	147	152	anti-parallel
Strand 5	G	155	161	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	68	70	anti-parallel
Strand 3	G	197	199	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	187	189	parallel
Strand 4	F	72	78	anti-parallel
Strand 5	F	94	101	anti-parallel
Strand 6	F	135	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	129	131	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	213	220	parallel
Strand 3	F	204	209	anti-parallel
Strand 4	F	147	152	anti-parallel
Strand 5	F	155	161	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	68	70	anti-parallel
Strand 3	F	197	199	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	187	189	parallel
Strand 4	D	72	78	anti-parallel
Strand 5	D	94	101	anti-parallel
Strand 6	D	135	136	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	129	131	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	213	220	parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	147	152	anti-parallel
Strand 5	D	155	161	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	68	70	anti-parallel
Strand 3	D	197	199	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	187	189	parallel
Strand 4	B	72	78	anti-parallel
Strand 5	B	94	101	anti-parallel
Strand 6	B	135	136	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	129	131	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	213	220	parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	147	152	anti-parallel
Strand 5	B	155	161	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	68	70	anti-parallel
Strand 3	B	197	199	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	187	189	parallel
Strand 4	C	72	78	anti-parallel
Strand 5	C	94	101	anti-parallel
Strand 6	C	135	136	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	129	131	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	213	220	parallel
Strand 3	C	204	209	anti-parallel
Strand 4	C	147	152	anti-parallel
Strand 5	C	155	161	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	68	70	anti-parallel
Strand 3	C	197	199	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	48	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	187	189	parallel
Strand 4	H	72	78	anti-parallel
Strand 5	H	94	101	anti-parallel
Strand 6	H	135	136	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	54	first strand
Strand 2	H	129	131	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	213	220	parallel
Strand 3	H	204	209	anti-parallel
Strand 4	H	147	152	anti-parallel
Strand 5	H	155	161	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	68	70	anti-parallel
Strand 3	H	197	199	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	187	189	parallel
Strand 4	E	72	78	anti-parallel
Strand 5	E	94	101	anti-parallel
Strand 6	E	135	136	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	129	131	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	213	220	parallel
Strand 3	E	204	209	anti-parallel
Strand 4	E	147	152	anti-parallel
Strand 5	E	155	161	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	68	70	anti-parallel
Strand 3	E	197	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOG