Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FOM entry

There are 2 chains in PDB entry 6FOM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 14	PHE 671
B	LEU 14	PHE 671

There are 11 helices in PDB entry 6FOM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	97	102	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	342	346	Right-handed 310
Helix 5	AA5	A	443	448	Right-handed alpha
Helix 6	AA6	B	47	51	Right-handed 310
Helix 7	AA7	B	97	101	Right-handed 310
Helix 8	AA8	B	103	107	Right-handed 310
Helix 9	AA9	B	342	346	Right-handed 310
Helix 10	AB1	B	459	464	Right-handed alpha
Helix 11	AB2	B	645	649	Right-handed 310

There are 11 sheets in PDB entry 6FOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	109	114	anti-parallel
Strand 3	A	128	133	anti-parallel
Strand 4	A	78	82	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	535	548	anti-parallel
Strand 3	A	510	530	anti-parallel
Strand 4	A	483	503	anti-parallel
Strand 5	A	593	594	anti-parallel

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There are 23 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	535	548	anti-parallel
Strand 3	A	562	570	anti-parallel
Strand 4	A	574	583	anti-parallel
Strand 5	A	607	619	anti-parallel
Strand 6	A	622	629	anti-parallel
Strand 7	A	662	670	anti-parallel
Strand 8	A	143	153	anti-parallel
Strand 9	A	157	168	anti-parallel
Strand 10	A	171	182	anti-parallel
Strand 11	A	197	208	anti-parallel
Strand 12	A	214	227	anti-parallel
Strand 13	A	235	251	anti-parallel
Strand 14	A	257	274	anti-parallel
Strand 15	A	292	310	anti-parallel
Strand 16	A	313	330	anti-parallel
Strand 17	A	349	365	anti-parallel
Strand 18	A	371	386	anti-parallel
Strand 19	A	408	423	anti-parallel
Strand 20	A	429	440	anti-parallel
Strand 21	A	467	479	anti-parallel
Strand 22	A	483	503	anti-parallel
Strand 23	A	593	594	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	339	341	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	400	401	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	109	114	anti-parallel
Strand 3	B	128	133	anti-parallel
Strand 4	B	78	82	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	73	74	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	535	548	anti-parallel
Strand 3	B	512	530	anti-parallel
Strand 4	B	483	501	anti-parallel
Strand 5	B	593	594	anti-parallel

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There are 23 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	535	548	anti-parallel
Strand 3	B	562	571	anti-parallel
Strand 4	B	574	583	anti-parallel
Strand 5	B	607	619	anti-parallel
Strand 6	B	622	629	anti-parallel
Strand 7	B	662	670	anti-parallel
Strand 8	B	143	153	anti-parallel
Strand 9	B	157	168	anti-parallel
Strand 10	B	171	182	anti-parallel
Strand 11	B	197	208	anti-parallel
Strand 12	B	216	227	anti-parallel
Strand 13	B	235	251	anti-parallel
Strand 14	B	257	274	anti-parallel
Strand 15	B	292	310	anti-parallel
Strand 16	B	313	330	anti-parallel
Strand 17	B	349	365	anti-parallel
Strand 18	B	371	386	anti-parallel
Strand 19	B	408	423	anti-parallel
Strand 20	B	429	440	anti-parallel
Strand 21	B	467	479	anti-parallel
Strand 22	B	483	501	anti-parallel
Strand 23	B	593	594	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	339	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FOM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOM