Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FOS entry

There are 15 chains in PDB entry 6FOS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	THR 94	LEU 237
3	GLU 61	ILE 210
4	VAL 99	ILE 250
A	VAL 9	GLY 748
B	PHE 8	SER 732
C	ALA 2	TYR 81
D	MET 6	VAL 129
E	MET 1	THR 69
F	LEU 31	SER 183
I	MET 1	LYS 32
J	MET 1	TYR 38
K	MET 14	ILE 60
L	MET 1	SER 140
M	MET 1	ALA 29
O	SER 51	LYS 148

There are124 helices in PDB entry 6FOS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	95	111	Right-handed alpha
Helix 2	AA2	2	111	116	Right-handed alpha
Helix 3	AA3	2	116	124	Right-handed alpha
Helix 4	AA4	2	132	137	Right-handed alpha
Helix 5	AA5	2	138	144	Right-handed 310
Helix 6	AA6	2	147	173	Right-handed alpha
Helix 7	AA7	2	179	197	Right-handed alpha
Helix 8	AA8	2	202	208	Right-handed alpha
Helix 9	AA9	2	208	226	Right-handed alpha
Helix 10	AB1	3	84	89	Right-handed alpha
Helix 11	AB2	3	93	98	Right-handed alpha
Helix 12	AB3	3	110	115	Right-handed 310
Helix 13	AB4	3	127	142	Right-handed alpha
Helix 14	AB5	3	178	200	Right-handed alpha
Helix 15	AB6	3	201	204	Right-handed 310
Helix 16	AB7	4	100	125	Right-handed alpha
Helix 17	AB8	4	149	173	Right-handed alpha
Helix 18	AB9	4	216	240	Right-handed alpha
Helix 19	AC1	A	22	27	Right-handed alpha
Helix 20	AC2	A	32	36	Right-handed 310
Helix 21	AC3	A	41	51	Right-handed alpha
Helix 22	AC4	A	54	58	Right-handed 310
Helix 23	AC5	A	61	91	Right-handed alpha
Helix 24	AC6	A	96	103	Right-handed alpha
Helix 25	AC7	A	119	124	Right-handed 310
Helix 26	AC8	A	139	147	Right-handed alpha
Helix 27	AC9	A	152	174	Right-handed alpha
Helix 28	AD1	A	183	187	Right-handed 310
Helix 29	AD2	A	189	198	Right-handed alpha
Helix 30	AD3	A	201	209	Right-handed alpha
Helix 31	AD4	A	235	242	Right-handed alpha
Helix 32	AD5	A	242	250	Right-handed alpha
Helix 33	AD6	A	258	263	Right-handed alpha
Helix 34	AD7	A	264	269	Right-handed 310
Helix 35	AD8	A	286	305	Right-handed alpha
Helix 36	AD9	A	317	323	Right-handed alpha
Helix 37	AE1	A	336	342	Right-handed alpha
Helix 38	AE2	A	344	370	Right-handed alpha
Helix 39	AE3	A	379	412	Right-handed alpha
Helix 40	AE4	A	420	429	Right-handed alpha
Helix 41	AE5	A	429	447	Right-handed alpha
Helix 42	AE6	A	447	462	Right-handed alpha
Helix 43	AE7	A	463	468	Right-handed alpha
Helix 44	AE8	A	468	474	Right-handed alpha
Helix 45	AE9	A	480	489	Right-handed alpha
Helix 46	AF1	A	527	552	Right-handed alpha
Helix 47	AF2	A	583	614	Right-handed alpha
Helix 48	AF3	A	640	645	Right-handed alpha
Helix 49	AF4	A	650	655	Right-handed alpha
Helix 50	AF5	A	663	683	Right-handed alpha
Helix 51	AF6	A	686	704	Right-handed alpha
Helix 52	AF7	A	716	731	Right-handed alpha
Helix 53	AF8	A	733	741	Right-handed alpha
Helix 54	AF9	A	742	747	Right-handed alpha
Helix 55	AG1	B	9	14	Right-handed alpha
Helix 56	AG2	B	18	27	Right-handed alpha
Helix 57	AG3	B	30	34	Right-handed 310
Helix 58	AG4	B	38	71	Right-handed alpha
Helix 59	AG5	B	73	80	Right-handed alpha
Helix 60	AG6	B	97	105	Right-handed alpha
Helix 61	AG7	B	132	156	Right-handed alpha
Helix 62	AG8	B	162	166	Right-handed 310
Helix 63	AG9	B	171	176	Right-handed alpha
Helix 64	AH1	B	182	191	Right-handed alpha
Helix 65	AH2	B	196	201	Right-handed alpha
Helix 66	AH3	B	220	225	Right-handed alpha
Helix 67	AH4	B	268	286	Right-handed alpha
Helix 68	AH5	B	287	294	Right-handed alpha
Helix 69	AH6	B	321	327	Right-handed alpha
Helix 70	AH7	B	327	349	Right-handed alpha
Helix 71	AH8	B	365	395	Right-handed alpha
Helix 72	AH9	B	405	410	Right-handed alpha
Helix 73	AI1	B	412	444	Right-handed alpha
Helix 74	AI2	B	455	464	Right-handed alpha
Helix 75	AI3	B	481	486	Right-handed alpha
Helix 76	AI4	B	491	500	Right-handed alpha
Helix 77	AI5	B	511	538	Right-handed alpha
Helix 78	AI6	B	545	551	Right-handed 310
Helix 79	AI7	B	569	593	Right-handed alpha
Helix 80	AI8	B	593	601	Right-handed alpha
Helix 81	AI9	B	603	605	Right-handed 310
Helix 82	AJ1	B	606	611	Right-handed alpha
Helix 83	AJ2	B	613	620	Right-handed alpha
Helix 84	AJ3	B	626	631	Right-handed alpha
Helix 85	AJ4	B	632	634	Right-handed 310
Helix 86	AJ5	B	641	664	Right-handed alpha
Helix 87	AJ6	B	666	683	Right-handed alpha
Helix 88	AJ7	B	685	689	Right-handed 310
Helix 89	AJ8	B	699	731	Right-handed alpha
Helix 90	AJ9	C	15	21	Right-handed alpha
Helix 91	AK1	C	44	48	Right-handed 310
Helix 92	AK2	C	53	58	Right-handed alpha
Helix 93	AK3	C	73	78	Right-handed alpha
Helix 94	AK4	D	19	25	Right-handed alpha
Helix 95	AK5	D	61	76	Right-handed alpha
Helix 96	AK6	F	37	57	Right-handed alpha
Helix 97	AK7	F	62	65	Right-handed 310
Helix 98	AK8	F	66	85	Right-handed alpha
Helix 99	AK9	F	100	104	Right-handed 310
Helix 100	AL1	F	109	132	Right-handed alpha
Helix 101	AL2	F	138	144	Right-handed alpha
Helix 102	AL3	F	147	154	Right-handed alpha
Helix 103	AL4	F	155	157	Right-handed 310
Helix 104	AL5	F	160	176	Right-handed alpha
Helix 105	AL6	I	6	9	Right-handed 310
Helix 106	AL7	I	10	32	Right-handed alpha
Helix 107	AL8	J	2	8	Right-handed alpha
Helix 108	AL9	J	9	29	Right-handed alpha
Helix 109	AM1	K	15	27	Right-handed alpha
Helix 110	AM2	K	30	35	Right-handed 310
Helix 111	AM3	K	36	55	Right-handed alpha
Helix 112	AM4	L	4	11	Right-handed alpha
Helix 113	AM5	L	24	34	Right-handed alpha
Helix 114	AM6	L	35	38	Right-handed 310
Helix 115	AM7	L	48	58	Right-handed alpha
Helix 116	AM8	L	59	65	Right-handed alpha
Helix 117	AM9	L	73	100	Right-handed alpha
Helix 118	AN1	L	111	132	Right-handed alpha
Helix 119	AN2	M	3	27	Right-handed alpha
Helix 120	AN3	O	58	62	Right-handed 310
Helix 121	AN4	O	66	82	Right-handed alpha
Helix 122	AN5	O	87	92	Right-handed alpha
Helix 123	AN6	O	110	113	Right-handed 310
Helix 124	AN7	O	114	133	Right-handed alpha

There are 8 sheets in PDB entry 6FOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	517	519	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	624	626	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	38	40	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	91	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	47	50	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	22	24	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	50	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FOS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FOS