Analysis of interatomic Contacts of Structural Units in PDB entry:
6FPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FPC entry

There are 4 chains in PDB entry 6FPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31PHE 215
B
 SER 31ALA 216
C
 GLU 29ALA 216
D
 GLN 30PHE 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6FPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
60 70Right-handed alpha
Helix 4
AA4
A
80 91Right-handed 310
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
150 153Right-handed 310
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
178 193Right-handed alpha
Helix 11
AB2
A
193 204Right-handed alpha
Helix 12
AB3
A
204 215Right-handed alpha
Helix 13
AB4
B
32 36Right-handed alpha
Helix 14
AB5
B
45 57Right-handed alpha
Helix 15
AB6
B
60 70Right-handed alpha
Helix 16
AB7
B
80 91Right-handed 310
Helix 17
AB8
B
104 108Right-handed 310
Helix 18
AB9
B
133 147Right-handed alpha
Helix 19
AC1
B
150 153Right-handed 310
Helix 20
AC2
B
154 165Right-handed alpha
Helix 21
AC3
B
165 170Right-handed alpha
Helix 22
AC4
B
178 193Right-handed alpha
Helix 23
AC5
B
193 204Right-handed alpha
Helix 24
AC6
B
204 215Right-handed alpha
Helix 25
AC7
C
32 36Right-handed alpha
Helix 26
AC8
C
45 57Right-handed alpha
Helix 27
AC9
C
60 70Right-handed alpha
Helix 28
AD1
C
85 92Right-handed alpha
Helix 29
AD2
C
110 113Right-handed 310
Helix 30
AD3
C
133 147Right-handed alpha
Helix 31
AD4
C
150 153Right-handed 310
Helix 32
AD5
C
154 165Right-handed alpha
Helix 33
AD6
C
165 170Right-handed alpha
Helix 34
AD7
C
178 193Right-handed alpha
Helix 35
AD8
C
193 204Right-handed alpha
Helix 36
AD9
C
204 216Right-handed alpha
Helix 37
AE1
D
31 36Right-handed alpha
Helix 38
AE2
D
45 56Right-handed alpha
Helix 39
AE3
D
57 59Right-handed 310
Helix 40
AE4
D
60 70Right-handed alpha
Helix 41
AE5
D
85 92Right-handed alpha
Helix 42
AE6
D
133 147Right-handed alpha
Helix 43
AE7
D
150 153Right-handed 310
Helix 44
AE8
D
154 165Right-handed alpha
Helix 45
AE9
D
165 170Right-handed alpha
Helix 46
AF1
D
178 193Right-handed alpha
Helix 47
AF2
D
193 204Right-handed alpha
Helix 48
AF3
D
204 215Right-handed alpha
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There are 4 sheets in PDB entry 6FPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
73 77parallel
Strand 3
A
115 119parallel
Strand 4
A
110 112anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
73 77parallel
Strand 3
B
115 119parallel
Strand 4
B
110 112anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
73 77parallel
Strand 3
C
115 119parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
73 77parallel
Strand 3
D
115 119parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il