Analysis of interatomic Contacts of Structural Units in PDB entry:
6FPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FPJ entry

There are 3 chains in PDB entry 6FPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 381
B
 PHE 2PHE 380
C
 PHE 2PHE 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6FPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
54 69Right-handed alpha
Helix 3
AA3
A
81 92Right-handed alpha
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
143 157Right-handed alpha
Helix 6
AA6
A
170 184Right-handed alpha
Helix 7
AA7
A
194 209Right-handed alpha
Helix 8
AA8
A
223 227Right-handed 310
Helix 9
AA9
A
229 235Right-handed alpha
Helix 10
AB1
A
249 260Right-handed alpha
Helix 11
AB2
A
276 299Right-handed alpha
Helix 12
AB3
A
322 332Right-handed alpha
Helix 13
AB4
B
16 32Right-handed alpha
Helix 14
AB5
B
54 69Right-handed alpha
Helix 15
AB6
B
81 93Right-handed alpha
Helix 16
AB7
B
117 128Right-handed alpha
Helix 17
AB8
B
143 157Right-handed alpha
Helix 18
AB9
B
170 184Right-handed alpha
Helix 19
AC1
B
194 209Right-handed alpha
Helix 20
AC2
B
223 227Right-handed 310
Helix 21
AC3
B
229 235Right-handed alpha
Helix 22
AC4
B
249 260Right-handed alpha
Helix 23
AC5
B
276 299Right-handed alpha
Helix 24
AC6
B
322 332Right-handed alpha
Helix 25
AC7
C
16 32Right-handed alpha
Helix 26
AC8
C
54 69Right-handed alpha
Helix 27
AC9
C
81 92Right-handed alpha
Helix 28
AD1
C
117 128Right-handed alpha
Helix 29
AD2
C
143 153Right-handed alpha
Helix 30
AD3
C
170 184Right-handed alpha
Helix 31
AD4
C
194 208Right-handed alpha
Helix 32
AD5
C
223 227Right-handed 310
Helix 33
AD6
C
229 235Right-handed alpha
Helix 34
AD7
C
249 260Right-handed alpha
Helix 35
AD8
C
276 299Right-handed alpha
Helix 36
AD9
C
321 332Right-handed alpha
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There are 9 sheets in PDB entry 6FPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 50first strand
Strand 2
A
5 13parallel
Strand 3
A
73 75parallel
Strand 4
A
96 98parallel
Strand 5
A
110 112parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
132 137parallel
Strand 3
A
188 192parallel
Strand 4
A
216 219parallel
Strand 5
A
238 243parallel
Strand 6
A
355 361anti-parallel
Strand 7
A
364 372anti-parallel
Strand 8
A
376 379anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
350 351anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 50first strand
Strand 2
B
5 13parallel
Strand 3
B
73 75parallel
Strand 4
B
96 98parallel
Strand 5
B
110 112parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 164first strand
Strand 2
B
132 137parallel
Strand 3
B
188 192parallel
Strand 4
B
216 219parallel
Strand 5
B
238 243parallel
Strand 6
B
354 361anti-parallel
Strand 7
B
364 372anti-parallel
Strand 8
B
376 379anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
340 344anti-parallel
Strand 3
B
350 351anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 50first strand
Strand 2
C
5 13parallel
Strand 3
C
73 75parallel
Strand 4
C
96 98parallel
Strand 5
C
110 112parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 164first strand
Strand 2
C
132 137parallel
Strand 3
C
188 192parallel
Strand 4
C
216 219parallel
Strand 5
C
238 243parallel
Strand 6
C
354 360anti-parallel
Strand 7
C
366 372anti-parallel
Strand 8
C
376 379anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 337first strand
Strand 2
C
340 344anti-parallel
Strand 3
C
350 351anti-parallel
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