Analysis of interatomic Contacts of Structural Units in PDB entry:
6FPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FPX entry

There are 6 chains in PDB entry 6FPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 312ARG 488
B
 U -3 A 7
C
 PRO 313ARG 488
D
 C -4 A 7
E
 PRO 314ARG 488
F
 U -2 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6FPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
320 324Right-handed 310
Helix 2
AA2
A
359 370Right-handed alpha
Helix 3
AA3
A
376 389Right-handed alpha
Helix 4
AA4
A
442 451Right-handed alpha
Helix 5
AA5
A
465 482Right-handed alpha
Helix 6
AA6
C
320 324Right-handed 310
Helix 7
AA7
C
359 370Right-handed alpha
Helix 8
AA8
C
376 387Right-handed alpha
Helix 9
AA9
C
442 451Right-handed alpha
Helix 10
AB1
C
465 482Right-handed alpha
Helix 11
AB2
E
320 324Right-handed 310
Helix 12
AB3
E
359 370Right-handed alpha
Helix 13
AB4
E
376 389Right-handed alpha
Helix 14
AB5
E
442 451Right-handed alpha
Helix 15
AB6
E
465 482Right-handed alpha
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There are 6 sheets in PDB entry 6FPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
340 341anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 375first strand
Strand 2
A
426 440anti-parallel
Strand 3
A
403 409anti-parallel
Strand 4
A
390 397anti-parallel
Strand 5
A
350 357parallel
Strand 6
A
463 464anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
331 332first strand
Strand 2
C
340 341anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
371 375first strand
Strand 2
C
426 440anti-parallel
Strand 3
C
403 409anti-parallel
Strand 4
C
390 397anti-parallel
Strand 5
C
350 357parallel
Strand 6
C
463 464anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
331 332first strand
Strand 2
E
340 341anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
371 375first strand
Strand 2
E
426 440anti-parallel
Strand 3
E
403 409anti-parallel
Strand 4
E
390 397anti-parallel
Strand 5
E
350 357parallel
Strand 6
E
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il