Analysis of interatomic Contacts of Structural Units in PDB entry:
6FPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FPY entry

There are 2 chains in PDB entry 6FPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 45	PRO 652
B	ASP 45	LYS 93

There are 34 helices in PDB entry 6FPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	120	Right-handed alpha
Helix 2	AA2	A	121	124	Right-handed 310
Helix 3	AA3	A	129	134	Right-handed alpha
Helix 4	AA4	A	213	220	Right-handed alpha
Helix 5	AA5	A	237	242	Right-handed alpha
Helix 6	AA6	A	300	304	Right-handed 310
Helix 7	AA7	A	305	322	Right-handed alpha
Helix 8	AA8	A	348	362	Right-handed alpha
Helix 9	AA9	A	369	387	Right-handed alpha
Helix 10	AB1	A	388	392	Right-handed 310
Helix 11	AB2	A	412	425	Right-handed alpha
Helix 12	AB3	A	440	450	Right-handed alpha
Helix 13	AB4	A	463	476	Right-handed alpha
Helix 14	AB5	A	543	555	Right-handed alpha
Helix 15	AB6	A	556	579	Right-handed alpha
Helix 16	AB7	A	582	601	Right-handed alpha
Helix 17	AB8	B	116	120	Right-handed alpha
Helix 18	AB9	B	120	125	Right-handed alpha
Helix 19	AC1	B	129	134	Right-handed alpha
Helix 20	AC2	B	213	220	Right-handed alpha
Helix 21	AC3	B	237	242	Right-handed alpha
Helix 22	AC4	B	300	304	Right-handed 310
Helix 23	AC5	B	305	321	Right-handed alpha
Helix 24	AC6	B	348	362	Right-handed alpha
Helix 25	AC7	B	369	383	Right-handed alpha
Helix 26	AC8	B	384	386	Right-handed 310
Helix 27	AC9	B	388	392	Right-handed 310
Helix 28	AD1	B	412	425	Right-handed alpha
Helix 29	AD2	B	440	450	Right-handed alpha
Helix 30	AD3	B	463	476	Right-handed alpha
Helix 31	AD4	B	543	555	Right-handed alpha
Helix 32	AD5	B	556	578	Right-handed alpha
Helix 33	AD6	B	579	581	Right-handed 310
Helix 34	AD7	B	582	601	Right-handed alpha

There are 16 sheets in PDB entry 6FPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	226	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	A	187	197	anti-parallel
Strand 4	A	51	63	parallel
Strand 5	A	66	77	anti-parallel
Strand 6	A	156	167	anti-parallel
Strand 7	A	96	104	anti-parallel
Strand 8	A	107	115	anti-parallel
Strand 9	A	607	611	anti-parallel
Strand 10	A	623	624	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	92	first strand
Strand 2	A	143	152	anti-parallel
Strand 3	A	136	138	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	181	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	202	209	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	276	281	anti-parallel
Strand 3	A	509	515	anti-parallel
Strand 4	A	492	495	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	327	333	anti-parallel
Strand 3	A	345	346	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	327	333	anti-parallel
Strand 3	A	291	298	parallel
Strand 4	A	395	402	parallel
Strand 5	A	430	435	parallel
Strand 6	A	455	458	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	504	first strand
Strand 2	A	478	486	anti-parallel
Strand 3	A	524	531	anti-parallel
Strand 4	A	534	541	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	644	645	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	226	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	B	187	197	anti-parallel
Strand 4	B	51	63	parallel
Strand 5	B	66	77	anti-parallel
Strand 6	B	156	167	anti-parallel
Strand 7	B	96	104	anti-parallel
Strand 8	B	107	115	anti-parallel
Strand 9	B	607	611	anti-parallel
Strand 10	B	623	624	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	92	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	136	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	181	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	202	209	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	509	515	anti-parallel
Strand 4	B	492	495	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	327	333	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	327	333	anti-parallel
Strand 3	B	291	298	parallel
Strand 4	B	395	402	parallel
Strand 5	B	430	435	parallel
Strand 6	B	455	458	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	504	first strand
Strand 2	B	478	486	anti-parallel
Strand 3	B	524	530	anti-parallel
Strand 4	B	535	541	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	616	first strand
Strand 2	B	643	645	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FPY