Analysis of interatomic Contacts of Structural Units in PDB entry:
6FQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FQM entry

There are 7 chains in PDB entry 6FQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 420	VAL 638
A	ILE 9	ARG 122
A	THR 124	LEU 490
D	SER 425	ALA 637
C	ASN 10	ARG 122
C	THR 124	LEU 490
E	G -8	A 7

There are104 helices in PDB entry 6FQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	468	475	Right-handed alpha
Helix 2	AA2	B	475	486	Right-handed alpha
Helix 3	AA3	B	489	493	Right-handed 310
Helix 4	AA4	B	510	528	Right-handed alpha
Helix 5	AA5	B	528	534	Right-handed alpha
Helix 6	AA6	B	610	623	Right-handed alpha
Helix 7	AA7	B	625	637	Right-handed alpha
Helix 8	AA8	A	14	32	Right-handed alpha
Helix 9	AA9	A	43	56	Right-handed alpha
Helix 10	AB1	A	67	78	Right-handed alpha
Helix 11	AB2	A	82	93	Right-handed alpha
Helix 12	AB3	A	120	123	Right-handed 310
Helix 13	AB4	A	129	137	Right-handed alpha
Helix 14	AB5	A	165	171	Right-handed alpha
Helix 15	AB6	A	187	201	Right-handed alpha
Helix 16	AB7	A	205	213	Right-handed alpha
Helix 17	AB8	A	227	237	Right-handed alpha
Helix 18	AB9	A	253	255	Right-handed 310
Helix 19	AC1	A	269	283	Right-handed alpha
Helix 20	AC2	A	313	325	Right-handed alpha
Helix 21	AC3	A	347	390	Right-handed alpha
Helix 22	AC4	A	390	401	Right-handed alpha
Helix 23	AC5	A	403	416	Right-handed alpha
Helix 24	AC6	A	418	427	Right-handed alpha
Helix 25	AC7	A	429	433	Right-handed 310
Helix 26	AC8	A	434	461	Right-handed alpha
Helix 27	AC9	A	461	481	Right-handed alpha
Helix 28	AD1	D	468	475	Right-handed alpha
Helix 29	AD2	D	475	486	Right-handed alpha
Helix 30	AD3	D	489	493	Right-handed 310
Helix 31	AD4	D	510	528	Right-handed alpha
Helix 32	AD5	D	528	534	Right-handed alpha
Helix 33	AD6	D	610	623	Right-handed alpha
Helix 34	AD7	D	625	637	Right-handed alpha
Helix 35	AD8	C	14	32	Right-handed alpha
Helix 36	AD9	C	43	56	Right-handed alpha
Helix 37	AE1	C	67	78	Right-handed alpha
Helix 38	AE2	C	82	93	Right-handed alpha
Helix 39	AE3	C	120	123	Right-handed 310
Helix 40	AE4	C	129	137	Right-handed alpha
Helix 41	AE5	C	165	171	Right-handed alpha
Helix 42	AE6	C	187	201	Right-handed alpha
Helix 43	AE7	C	205	213	Right-handed alpha
Helix 44	AE8	C	227	237	Right-handed alpha
Helix 45	AE9	C	253	255	Right-handed 310
Helix 46	AF1	C	269	283	Right-handed alpha
Helix 47	AF2	C	313	325	Right-handed alpha
Helix 48	AF3	C	347	390	Right-handed alpha
Helix 49	AF4	C	390	401	Right-handed alpha
Helix 50	AF5	C	403	416	Right-handed alpha
Helix 51	AF6	C	418	427	Right-handed alpha
Helix 52	AF7	C	429	433	Right-handed 310
Helix 53	AF8	C	434	461	Right-handed alpha
Helix 54	AF9	C	461	481	Right-handed alpha
Helix 55	AG1	b	468	475	Right-handed alpha
Helix 56	AG2	b	475	486	Right-handed alpha
Helix 57	AG3	b	489	493	Right-handed 310
Helix 58	AG4	b	510	528	Right-handed alpha
Helix 59	AG5	b	528	534	Right-handed alpha
Helix 60	AG6	b	610	623	Right-handed alpha
Helix 61	AG7	b	625	637	Right-handed alpha
Helix 62	AG8	a	14	32	Right-handed alpha
Helix 63	AG9	a	43	56	Right-handed alpha
Helix 64	AH1	a	67	78	Right-handed alpha
Helix 65	AH2	a	82	93	Right-handed alpha
Helix 66	AH3	a	129	137	Right-handed alpha
Helix 67	AH4	a	165	171	Right-handed alpha
Helix 68	AH5	a	187	201	Right-handed alpha
Helix 69	AH6	a	205	213	Right-handed alpha
Helix 70	AH7	a	227	237	Right-handed alpha
Helix 71	AH8	a	269	283	Right-handed alpha
Helix 72	AH9	a	313	325	Right-handed alpha
Helix 73	AI1	a	347	390	Right-handed alpha
Helix 74	AI2	a	390	401	Right-handed alpha
Helix 75	AI3	a	403	416	Right-handed alpha
Helix 76	AI4	a	418	427	Right-handed alpha
Helix 77	AI5	a	429	433	Right-handed 310
Helix 78	AI6	a	434	461	Right-handed alpha
Helix 79	AI7	a	461	481	Right-handed alpha
Helix 80	AI8	d	468	475	Right-handed alpha
Helix 81	AI9	d	475	486	Right-handed alpha
Helix 82	AJ1	d	510	528	Right-handed alpha
Helix 83	AJ2	d	528	535	Right-handed alpha
Helix 84	AJ3	d	610	623	Right-handed alpha
Helix 85	AJ4	d	625	637	Right-handed alpha
Helix 86	AJ5	c	14	32	Right-handed alpha
Helix 87	AJ6	c	43	57	Right-handed alpha
Helix 88	AJ7	c	67	78	Right-handed alpha
Helix 89	AJ8	c	82	93	Right-handed alpha
Helix 90	AJ9	c	120	123	Right-handed 310
Helix 91	AK1	c	129	137	Right-handed alpha
Helix 92	AK2	c	165	171	Right-handed alpha
Helix 93	AK3	c	187	201	Right-handed alpha
Helix 94	AK4	c	205	213	Right-handed alpha
Helix 95	AK5	c	227	237	Right-handed alpha
Helix 96	AK6	c	269	283	Right-handed alpha
Helix 97	AK7	c	313	325	Right-handed alpha
Helix 98	AK8	c	347	390	Right-handed alpha
Helix 99	AK9	c	390	401	Right-handed alpha
Helix 100	AL1	c	403	416	Right-handed alpha
Helix 101	AL2	c	418	427	Right-handed alpha
Helix 102	AL3	c	429	433	Right-handed 310
Helix 103	AL4	c	434	461	Right-handed alpha
Helix 104	AL5	c	461	481	Right-handed alpha

There are 28 sheets in PDB entry 6FQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	430	434	parallel
Strand 3	B	502	506	parallel
Strand 4	B	537	540	parallel
Strand 5	B	603	607	anti-parallel
Strand 6	A	11	13	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	125	128	anti-parallel
Strand 3	A	104	107	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	155	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	180	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	334	first strand
Strand 2	A	238	244	anti-parallel
Strand 3	A	223	225	anti-parallel
Strand 4	A	487	489	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	251	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	342	345	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	456	first strand
Strand 2	D	430	434	parallel
Strand 3	D	502	506	parallel
Strand 4	D	537	540	parallel
Strand 5	D	603	607	anti-parallel
Strand 6	C	11	13	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	125	128	anti-parallel
Strand 3	C	104	107	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	155	157	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	180	183	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	334	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	223	225	anti-parallel
Strand 4	C	487	489	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	251	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	342	345	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	452	456	first strand
Strand 2	b	430	434	parallel
Strand 3	b	502	506	parallel
Strand 4	b	537	541	parallel
Strand 5	b	602	607	anti-parallel
Strand 6	a	11	13	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	65	66	first strand
Strand 2	a	125	128	anti-parallel
Strand 3	a	104	107	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	146	148	first strand
Strand 2	a	155	157	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	172	175	first strand
Strand 2	a	180	183	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	328	334	first strand
Strand 2	a	238	244	anti-parallel
Strand 3	a	223	225	anti-parallel
Strand 4	a	487	489	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	246	249	first strand
Strand 2	a	258	263	anti-parallel
Strand 3	a	304	308	anti-parallel
Strand 4	a	289	294	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	336	339	first strand
Strand 2	a	342	345	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	452	457	first strand
Strand 2	d	430	435	parallel
Strand 3	d	502	506	parallel
Strand 4	d	537	539	parallel
Strand 5	d	604	607	anti-parallel
Strand 6	c	11	13	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	65	66	first strand
Strand 2	c	125	128	anti-parallel
Strand 3	c	104	107	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	146	148	first strand
Strand 2	c	155	157	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	172	175	first strand
Strand 2	c	180	183	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	328	334	first strand
Strand 2	c	238	244	anti-parallel
Strand 3	c	223	225	anti-parallel
Strand 4	c	487	489	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	246	250	first strand
Strand 2	c	258	263	anti-parallel
Strand 3	c	304	308	anti-parallel
Strand 4	c	289	294	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	336	339	first strand
Strand 2	c	342	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FQM