Analysis of interatomic Contacts of Structural Units in PDB entry:
6FUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FUF entry

There are 2 chains in PDB entry 6FUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2MET 317
B
 ASP 33TYR 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6FUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 65Right-handed alpha
Helix 2
AA2
A
66 69Right-handed 310
Helix 3
AA3
A
70 72Right-handed 310
Helix 4
AA4
A
73 89Right-handed alpha
Helix 5
AA5
A
90 99Right-handed alpha
Helix 6
AA6
A
105 141Right-handed alpha
Helix 7
AA7
A
149 169Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
212 237Right-handed alpha
Helix 10
AB1
A
240 278Right-handed alpha
Helix 11
AB2
A
284 289Right-handed alpha
Helix 12
AB3
A
289 297Right-handed alpha
Helix 13
AB4
A
297 307Right-handed alpha
Helix 14
AB5
B
45 50Right-handed alpha
Helix 15
AB6
B
212 216Right-handed 310
Helix 16
AB7
B
243 256Right-handed alpha
Helix 17
AB8
B
271 282Right-handed alpha
Helix 18
AB9
B
283 287Right-handed 310
Helix 19
AC1
B
296 311Right-handed alpha
Helix 20
AC2
B
331 352Right-handed alpha
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There are 4 sheets in PDB entry 6FUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
10 11anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
186 189anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
191 192anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
195 201anti-parallel
Strand 3
B
34 39parallel
Strand 4
B
221 227parallel
Strand 5
B
265 270parallel
Strand 6
B
319 323parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il