Analysis of interatomic Contacts of Structural Units in PDB entry:
6FV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FV5 entry

There are 2 chains in PDB entry 6FV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 415
B
 ARG -1PHE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6FV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 51Right-handed alpha
Helix 2
AA2
A
64 68Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
125 137Right-handed alpha
Helix 6
AA6
A
148 152Right-handed 310
Helix 7
AA7
A
156 180Right-handed alpha
Helix 8
AA8
A
198 211Right-handed alpha
Helix 9
AA9
A
229 241Right-handed alpha
Helix 10
AB1
A
256 265Right-handed alpha
Helix 11
AB2
A
273 282Right-handed alpha
Helix 12
AB3
A
337 341Right-handed 310
Helix 13
AB4
A
353 359Right-handed alpha
Helix 14
AB5
A
360 370Right-handed alpha
Helix 15
AB6
A
373 400Right-handed alpha
Helix 16
AB7
A
402 414Right-handed alpha
Helix 17
AB8
B
46 52Right-handed alpha
Helix 18
AB9
B
64 68Right-handed alpha
Helix 19
AC1
B
70 78Right-handed alpha
Helix 20
AC2
B
80 85Right-handed alpha
Helix 21
AC3
B
126 137Right-handed alpha
Helix 22
AC4
B
148 152Right-handed 310
Helix 23
AC5
B
156 180Right-handed alpha
Helix 24
AC6
B
198 211Right-handed alpha
Helix 25
AC7
B
229 243Right-handed alpha
Helix 26
AC8
B
256 266Right-handed alpha
Helix 27
AC9
B
273 282Right-handed alpha
Helix 28
AD1
B
337 341Right-handed 310
Helix 29
AD2
B
353 359Right-handed alpha
Helix 30
AD3
B
360 370Right-handed alpha
Helix 31
AD4
B
373 400Right-handed alpha
Helix 32
AD5
B
402 415Right-handed alpha
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There are 9 sheets in PDB entry 6FV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 20anti-parallel
Strand 3
A
26 30anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
60 63parallel
Strand 3
A
92 95parallel
Strand 4
A
140 142parallel
Strand 5
A
188 193parallel
Strand 6
A
216 219parallel
Strand 7
A
249 251parallel
Strand 8
A
270 272parallel
Strand 9
A
32 36parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
120 124anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
332 334anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
12 20anti-parallel
Strand 3
B
26 30anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
270 272parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
92 95parallel
Strand 3
B
140 142parallel
Strand 4
B
188 193parallel
Strand 5
B
216 219parallel
Strand 6
B
249 251parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 117first strand
Strand 2
B
120 125anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
332 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il