Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FVM entry

There are 6 chains in PDB entry 6FVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	LEU 366
B	SER -1	LEU 366
H	GLN 2	GLN 2
H	ASP 4	PHE 6
I	GLN 2	GLN 2
I	ASP 4	PHE 6

There are 22 helices in PDB entry 6FVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	72	82	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	132	141	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	152	155	Right-handed 310
Helix 8	AA8	A	197	207	Right-handed alpha
Helix 9	AA9	A	243	248	Right-handed alpha
Helix 10	AB1	A	260	273	Right-handed alpha
Helix 11	AB2	A	321	331	Right-handed alpha
Helix 12	AB3	B	7	18	Right-handed alpha
Helix 13	AB4	B	27	30	Right-handed 310
Helix 14	AB5	B	72	82	Right-handed alpha
Helix 15	AB6	B	112	116	Right-handed 310
Helix 16	AB7	B	132	143	Right-handed alpha
Helix 17	AB8	B	144	146	Right-handed 310
Helix 18	AB9	B	152	155	Right-handed 310
Helix 19	AC1	B	197	207	Right-handed alpha
Helix 20	AC2	B	243	247	Right-handed 310
Helix 21	AC3	B	260	273	Right-handed alpha
Helix 22	AC4	B	321	331	Right-handed alpha

There are 6 sheets in PDB entry 6FVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	B	301	307	anti-parallel
Strand 6	B	289	295	anti-parallel
Strand 7	B	280	286	anti-parallel
Strand 8	B	315	320	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	230	235	anti-parallel
Strand 6	A	222	227	anti-parallel
Strand 7	A	213	219	anti-parallel
Strand 8	A	124	131	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	335	340	anti-parallel
Strand 4	A	347	351	anti-parallel
Strand 5	A	357	361	anti-parallel
Strand 6	A	176	196	anti-parallel
Strand 7	A	157	172	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	320	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	289	295	anti-parallel
Strand 4	A	301	307	anti-parallel
Strand 5	B	104	109	anti-parallel
Strand 6	B	96	101	anti-parallel
Strand 7	B	87	93	anti-parallel
Strand 8	B	2	6	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	230	235	anti-parallel
Strand 6	B	222	227	anti-parallel
Strand 7	B	213	219	anti-parallel
Strand 8	B	124	131	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	335	340	anti-parallel
Strand 4	B	347	351	anti-parallel
Strand 5	B	357	361	anti-parallel
Strand 6	B	176	196	anti-parallel
Strand 7	B	157	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVM