Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FVN entry

There are 12 chains in PDB entry 6FVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 13	LEU 400
J	GLN 468	GLN 468
J	ASP 470	PHE 472
B	THR 12	LEU 400
K	GLN 468	GLN 468
K	ASP 470	PHE 472
C	THR 12	LEU 400
H	GLN 468	GLN 468
H	ASP 470	PHE 472
D	THR 12	LEU 400
I	GLN 468	GLN 468
I	ASP 470	PHE 472

There are 33 helices in PDB entry 6FVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	33	Right-handed alpha
Helix 2	AA2	A	83	93	Right-handed alpha
Helix 3	AA3	A	141	153	Right-handed alpha
Helix 4	AA4	A	208	217	Right-handed alpha
Helix 5	AA5	A	277	288	Right-handed alpha
Helix 6	AA6	A	289	295	Right-handed 310
Helix 7	AA7	A	336	348	Right-handed alpha
Helix 8	AA8	B	19	32	Right-handed alpha
Helix 9	AA9	B	41	43	Right-handed 310
Helix 10	AB1	B	83	93	Right-handed alpha
Helix 11	AB2	B	141	153	Right-handed alpha
Helix 12	AB3	B	208	216	Right-handed alpha
Helix 13	AB4	B	277	288	Right-handed alpha
Helix 14	AB5	B	289	295	Right-handed 310
Helix 15	AB6	B	336	348	Right-handed alpha
Helix 16	AB7	C	19	32	Right-handed alpha
Helix 17	AB8	C	41	43	Right-handed 310
Helix 18	AB9	C	83	93	Right-handed alpha
Helix 19	AC1	C	122	126	Right-handed 310
Helix 20	AC2	C	141	153	Right-handed alpha
Helix 21	AC3	C	208	217	Right-handed alpha
Helix 22	AC4	C	277	288	Right-handed alpha
Helix 23	AC5	C	289	291	Right-handed 310
Helix 24	AC6	C	336	348	Right-handed alpha
Helix 25	AC7	D	20	33	Right-handed alpha
Helix 26	AC8	D	83	93	Right-handed alpha
Helix 27	AC9	D	122	126	Right-handed 310
Helix 28	AD1	D	140	153	Right-handed alpha
Helix 29	AD2	D	161	164	Right-handed 310
Helix 30	AD3	D	208	217	Right-handed alpha
Helix 31	AD4	D	277	288	Right-handed alpha
Helix 32	AD5	D	289	295	Right-handed 310
Helix 33	AD6	D	336	348	Right-handed alpha

There are 15 sheets in PDB entry 6FVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	15	18	anti-parallel
Strand 3	A	98	103	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	114	119	anti-parallel
Strand 6	B	317	323	anti-parallel
Strand 7	B	305	310	anti-parallel
Strand 8	B	297	302	anti-parallel
Strand 9	B	331	335	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	45	50	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	63	69	anti-parallel
Strand 5	A	247	252	anti-parallel
Strand 6	A	239	244	anti-parallel
Strand 7	A	223	227	anti-parallel
Strand 8	A	135	140	anti-parallel
Strand 9	A	194	195	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	207	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	391	395	anti-parallel
Strand 6	A	363	368	anti-parallel
Strand 7	A	351	356	anti-parallel
Strand 8	A	271	276	anti-parallel
Strand 9	A	325	327	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	384	385	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	305	310	anti-parallel
Strand 4	A	317	323	anti-parallel
Strand 5	B	114	119	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	98	103	anti-parallel
Strand 8	B	15	18	anti-parallel
Strand 9	B	72	75	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	82	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	54	60	anti-parallel
Strand 4	B	63	69	anti-parallel
Strand 5	B	247	252	anti-parallel
Strand 6	B	239	244	anti-parallel
Strand 7	B	223	227	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	194	195	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	207	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	391	395	anti-parallel
Strand 6	B	363	368	anti-parallel
Strand 7	B	351	356	anti-parallel
Strand 8	B	271	276	anti-parallel
Strand 9	B	325	327	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	384	385	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	15	18	anti-parallel
Strand 3	C	98	103	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	114	119	anti-parallel
Strand 6	D	317	323	anti-parallel
Strand 7	D	305	310	anti-parallel
Strand 8	D	297	302	anti-parallel
Strand 9	D	331	335	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	82	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	C	54	59	anti-parallel
Strand 4	C	63	70	anti-parallel
Strand 5	C	247	252	anti-parallel
Strand 6	C	239	244	anti-parallel
Strand 7	C	223	227	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	194	195	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	207	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	175	181	anti-parallel
Strand 4	C	185	192	anti-parallel
Strand 5	C	391	395	anti-parallel
Strand 6	C	363	368	anti-parallel
Strand 7	C	351	356	anti-parallel
Strand 8	C	271	276	anti-parallel
Strand 9	C	325	327	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	335	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	305	310	anti-parallel
Strand 4	C	317	323	anti-parallel
Strand 5	D	114	119	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	97	103	anti-parallel
Strand 8	D	15	19	anti-parallel
Strand 9	D	72	75	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	82	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	63	69	anti-parallel
Strand 5	D	247	252	anti-parallel
Strand 6	D	239	244	anti-parallel
Strand 7	D	224	227	anti-parallel
Strand 8	D	137	139	anti-parallel
Strand 9	D	194	195	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	207	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	175	181	anti-parallel
Strand 4	D	185	192	anti-parallel
Strand 5	D	391	395	anti-parallel
Strand 6	D	363	368	anti-parallel
Strand 7	D	351	356	anti-parallel
Strand 8	D	271	276	anti-parallel
Strand 9	D	325	327	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	384	385	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVN