Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FVO entry

There are 12 chains in PDB entry 6FVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	PRO 401
B	VAL 8	LEU 400
C	VAL 8	PRO 401
D	VAL 8	PRO 401
H	GLN 2	GLN 2
H	ASP 4	PHE 6
I	GLN 2	GLN 2
I	ASP 4	PHE 6
J	GLN 2	GLN 2
J	ASP 4	PHE 6
K	GLN 2	GLN 2
K	ASP 4	PHE 6

There are 44 helices in PDB entry 6FVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed alpha
Helix 3	AA3	A	83	93	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	141	153	Right-handed alpha
Helix 6	AA6	A	161	164	Right-handed 310
Helix 7	AA7	A	208	219	Right-handed alpha
Helix 8	AA8	A	260	264	Right-handed 310
Helix 9	AA9	A	277	288	Right-handed alpha
Helix 10	AB1	A	289	290	Right-handed 310
Helix 11	AB2	A	291	295	Right-handed 310
Helix 12	AB3	A	336	348	Right-handed alpha
Helix 13	AB4	B	18	31	Right-handed alpha
Helix 14	AB5	B	39	42	Right-handed 310
Helix 15	AB6	B	83	93	Right-handed alpha
Helix 16	AB7	B	122	126	Right-handed 310
Helix 17	AB8	B	141	153	Right-handed alpha
Helix 18	AB9	B	161	164	Right-handed 310
Helix 19	AC1	B	208	217	Right-handed alpha
Helix 20	AC2	B	277	288	Right-handed alpha
Helix 21	AC3	B	289	295	Right-handed 310
Helix 22	AC4	B	336	348	Right-handed alpha
Helix 23	AC5	C	19	32	Right-handed alpha
Helix 24	AC6	C	39	42	Right-handed 310
Helix 25	AC7	C	83	93	Right-handed alpha
Helix 26	AC8	C	122	126	Right-handed 310
Helix 27	AC9	C	141	153	Right-handed alpha
Helix 28	AD1	C	161	164	Right-handed 310
Helix 29	AD2	C	208	217	Right-handed alpha
Helix 30	AD3	C	260	264	Right-handed 310
Helix 31	AD4	C	277	288	Right-handed alpha
Helix 32	AD5	C	289	295	Right-handed 310
Helix 33	AD6	C	336	348	Right-handed alpha
Helix 34	AD7	D	19	31	Right-handed alpha
Helix 35	AD8	D	39	42	Right-handed 310
Helix 36	AD9	D	83	93	Right-handed alpha
Helix 37	AE1	D	122	126	Right-handed 310
Helix 38	AE2	D	140	153	Right-handed alpha
Helix 39	AE3	D	161	164	Right-handed 310
Helix 40	AE4	D	208	217	Right-handed alpha
Helix 41	AE5	D	260	264	Right-handed 310
Helix 42	AE6	D	277	288	Right-handed alpha
Helix 43	AE7	D	289	295	Right-handed 310
Helix 44	AE8	D	336	348	Right-handed alpha

There are 16 sheets in PDB entry 6FVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	14	18	anti-parallel
Strand 3	A	97	103	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	114	119	anti-parallel
Strand 6	B	316	327	anti-parallel
Strand 7	B	271	276	anti-parallel
Strand 8	B	351	356	anti-parallel
Strand 9	B	363	368	anti-parallel
Strand 10	B	391	395	anti-parallel
Strand 11	B	185	192	anti-parallel
Strand 12	B	175	181	anti-parallel
Strand 13	B	166	172	anti-parallel
Strand 14	B	201	207	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	14	18	anti-parallel
Strand 3	A	97	103	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	114	119	anti-parallel
Strand 6	B	316	327	anti-parallel
Strand 7	B	304	312	anti-parallel
Strand 8	B	297	302	anti-parallel
Strand 9	B	331	335	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	53	59	anti-parallel
Strand 4	A	63	70	anti-parallel
Strand 5	A	247	252	anti-parallel
Strand 6	A	239	244	anti-parallel
Strand 7	A	223	227	anti-parallel
Strand 8	A	135	140	anti-parallel
Strand 9	A	194	195	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	207	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	391	395	anti-parallel
Strand 6	A	363	368	anti-parallel
Strand 7	A	351	356	anti-parallel
Strand 8	A	271	276	anti-parallel
Strand 9	A	325	327	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	384	385	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	305	312	anti-parallel
Strand 4	A	316	322	anti-parallel
Strand 5	B	114	121	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	98	103	anti-parallel
Strand 8	B	14	17	anti-parallel
Strand 9	B	72	75	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	335	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	305	312	anti-parallel
Strand 4	A	316	322	anti-parallel
Strand 5	B	114	121	anti-parallel
Strand 6	B	77	82	anti-parallel
Strand 7	B	44	50	anti-parallel
Strand 8	B	53	59	anti-parallel
Strand 9	B	64	69	anti-parallel
Strand 10	B	247	252	anti-parallel
Strand 11	B	239	244	anti-parallel
Strand 12	B	223	228	anti-parallel
Strand 13	B	135	140	anti-parallel
Strand 14	B	194	195	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	384	385	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	14	18	anti-parallel
Strand 3	C	97	103	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	114	119	anti-parallel
Strand 6	D	316	322	anti-parallel
Strand 7	D	305	312	anti-parallel
Strand 8	D	297	302	anti-parallel
Strand 9	D	331	335	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	82	first strand
Strand 2	C	44	49	anti-parallel
Strand 3	C	53	58	anti-parallel
Strand 4	C	64	70	anti-parallel
Strand 5	C	247	252	anti-parallel
Strand 6	C	239	244	anti-parallel
Strand 7	C	223	227	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	194	195	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	207	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	175	181	anti-parallel
Strand 4	C	185	192	anti-parallel
Strand 5	C	391	395	anti-parallel
Strand 6	C	363	368	anti-parallel
Strand 7	C	351	356	anti-parallel
Strand 8	C	271	276	anti-parallel
Strand 9	C	325	327	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	384	385	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	335	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	305	312	anti-parallel
Strand 4	C	316	322	anti-parallel
Strand 5	D	114	121	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	97	103	anti-parallel
Strand 8	D	14	18	anti-parallel
Strand 9	D	72	75	anti-parallel

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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	335	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	305	312	anti-parallel
Strand 4	C	316	322	anti-parallel
Strand 5	D	114	121	anti-parallel
Strand 6	D	77	82	anti-parallel
Strand 7	D	44	50	anti-parallel
Strand 8	D	53	58	anti-parallel
Strand 9	D	64	69	anti-parallel
Strand 10	D	247	251	anti-parallel
Strand 11	D	240	244	anti-parallel
Strand 12	D	224	227	anti-parallel
Strand 13	D	135	139	anti-parallel
Strand 14	D	194	195	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	207	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	175	181	anti-parallel
Strand 4	D	185	192	anti-parallel
Strand 5	D	391	395	anti-parallel
Strand 6	D	363	368	anti-parallel
Strand 7	D	351	356	anti-parallel
Strand 8	D	271	276	anti-parallel
Strand 9	D	325	327	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	384	385	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FVO