Analysis of interatomic Contacts of Structural Units in PDB entry:
6FXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FXD entry

There are 2 chains in PDB entry 6FXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -5ALA 122
B
 ASN 2ALA 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6FXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 33Right-handed alpha
Helix 3
AA3
A
58 76Right-handed alpha
Helix 4
AA4
A
77 80Right-handed 310
Helix 5
AA5
A
90 95Right-handed alpha
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
B
14 16Right-handed 310
Helix 8
AA8
B
17 33Right-handed alpha
Helix 9
AA9
B
58 69Right-handed alpha
Helix 10
AB1
B
69 77Right-handed alpha
Helix 11
AB2
B
90 95Right-handed alpha
Helix 12
AB3
B
101 105Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6FXD.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 12first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
38 46anti-parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
81 89parallel
Strand 6
B
5 12anti-parallel
Strand 7
B
49 56anti-parallel
Strand 8
B
38 46anti-parallel
Strand 9
A
107 116anti-parallel
Strand 10
A
81 89parallel
Strand 11
A
5 12anti-parallel
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