Analysis of interatomic Contacts of Structural Units in PDB entry:
6FXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FXP entry

There are 2 chains in PDB entry 6FXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 250
B
 ALA 251LYS 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6FXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
64 70Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
90 95Right-handed alpha
Helix 7
AA7
A
96 108Right-handed alpha
Helix 8
AA8
A
110 120Right-handed alpha
Helix 9
AA9
A
121 122Right-handed 310
Helix 10
AB1
A
123 125Right-handed 310
Helix 11
AB2
A
126 132Right-handed alpha
Helix 12
AB3
A
152 164Right-handed alpha
Helix 13
AB4
A
168 185Right-handed alpha
Helix 14
AB5
A
192 199Right-handed alpha
Helix 15
AB6
A
213 229Right-handed alpha
Helix 16
AB7
A
244 249Right-handed alpha
Helix 17
AB8
B
268 280Right-handed alpha
Helix 18
AB9
B
297 306Right-handed alpha
Helix 19
AC1
B
306 312Right-handed alpha
Helix 20
AC2
B
315 321Right-handed 310
Helix 21
AC3
B
330 339Right-handed alpha
Helix 22
AC4
B
341 346Right-handed alpha
Helix 23
AC5
B
347 359Right-handed alpha
Helix 24
AC6
B
361 373Right-handed alpha
Helix 25
AC7
B
377 383Right-handed alpha
Helix 26
AC8
B
403 415Right-handed alpha
Helix 27
AC9
B
419 436Right-handed alpha
Helix 28
AD1
B
443 450Right-handed alpha
Helix 29
AD2
B
464 480Right-handed alpha
Helix 30
AD3
B
495 500Right-handed alpha
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There are 5 sheets in PDB entry 6FXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 241first strand
Strand 2
A
7 14parallel
Strand 3
B
259 264anti-parallel
Strand 4
B
486 491parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
42 44anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
138 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
293 295anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
B
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il