Analysis of interatomic Contacts of Structural Units in PDB entry:
6FY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FY1 entry

There are 4 chains in PDB entry 6FY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	VAL 2	VAL 211
X	MET 118	PHE 245
Z	TYR 2	THR 201
H	GLU 1	THR 193

There are 22 helices in PDB entry 6FY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	28	32	Right-handed 310
Helix 2	AA2	Y	83	87	Right-handed 310
Helix 3	AA3	X	161	175	Right-handed alpha
Helix 4	AA4	X	205	220	Right-handed alpha
Helix 5	AA5	X	230	232	Right-handed 310
Helix 6	AA6	Z	27	31	Right-handed 310
Helix 7	AA7	Z	79	83	Right-handed 310
Helix 8	AA8	Z	121	127	Right-handed alpha
Helix 9	AA9	H	28	32	Right-handed 310
Helix 10	AB1	H	127	129	Right-handed 310
Helix 11	AB2	H	187	190	Right-handed 310
Helix 12	AB3	H	201	204	Right-handed 310
Helix 13	AB4	G	138	152	Right-handed 310
Helix 14	AB5	G	153	160	Right-handed alpha
Helix 15	AB6	G	162	174	Right-handed alpha
Helix 16	AB7	G	175	177	Right-handed 310
Helix 17	AB8	G	184	188	Right-handed 310
Helix 18	AB9	G	207	221	Right-handed alpha
Helix 19	AC1	L	27	31	Right-handed 310
Helix 20	AC2	L	79	83	Right-handed 310
Helix 21	AC3	L	121	126	Right-handed alpha
Helix 22	AC4	L	181	187	Right-handed alpha

There are 25 sheets in PDB entry 6FY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	3	6	first strand
Strand 2	Y	18	25	anti-parallel
Strand 3	Y	77	82	anti-parallel
Strand 4	Y	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	12	first strand
Strand 2	Y	107	111	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	33	39	anti-parallel
Strand 5	Y	45	52	anti-parallel
Strand 6	Y	56	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	12	first strand
Strand 2	Y	107	111	parallel
Strand 3	Y	88	95	anti-parallel
Strand 4	Y	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	124	first strand
Strand 2	Y	139	145	anti-parallel
Strand 3	Y	176	181	anti-parallel
Strand 4	Y	164	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	124	first strand
Strand 2	Y	139	145	anti-parallel
Strand 3	Y	176	181	anti-parallel
Strand 4	Y	169	170	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	153	154	first strand
Strand 2	Y	195	197	anti-parallel
Strand 3	Y	208	210	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	193	203	first strand
Strand 2	X	119	129	anti-parallel
Strand 3	X	234	239	parallel
Strand 4	X	225	229	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	9	13	first strand
Strand 2	Z	102	106	parallel
Strand 3	Z	84	92	anti-parallel
Strand 4	Z	34	38	anti-parallel
Strand 5	Z	44	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	9	13	first strand
Strand 2	Z	102	106	parallel
Strand 3	Z	84	92	anti-parallel
Strand 4	Z	95	98	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	19	24	first strand
Strand 2	Z	70	75	anti-parallel
Strand 3	Z	62	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	114	118	first strand
Strand 2	Z	131	139	anti-parallel
Strand 3	Z	172	179	anti-parallel
Strand 4	Z	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	114	118	first strand
Strand 2	Z	131	139	anti-parallel
Strand 3	Z	172	179	anti-parallel
Strand 4	Z	165	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	132	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	201	first strand
Strand 2	G	121	129	anti-parallel
Strand 3	G	236	239	parallel
Strand 4	G	225	227	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	201	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FY1