Analysis of interatomic Contacts of Structural Units in PDB entry:
6FY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FY8 entry

There is 1 chain in PDB entry 6FY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7PRO 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6FY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
53 66Right-handed alpha
Helix 4
AA4
A
116 125Right-handed alpha
Helix 5
AA5
A
126 128Right-handed 310
Helix 6
AA6
A
140 146Right-handed alpha
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
159 162Right-handed 310
Helix 9
AA9
A
184 195Right-handed alpha
Helix 10
AB1
A
196 199Right-handed 310
Helix 11
AB2
A
225 239Right-handed alpha
Helix 12
AB3
A
260 264Right-handed 310
Helix 13
AB4
A
278 291Right-handed alpha
Helix 14
AB5
A
305 310Right-handed alpha
Helix 15
AB6
A
333 343Right-handed alpha
Helix 16
AB7
A
360 364Right-handed 310
Helix 17
AB8
A
367 371Right-handed 310
Helix 18
AB9
A
393 406Right-handed alpha
Helix 19
AC1
A
407 412Right-handed 310
Helix 20
AC2
A
416 420Right-handed 310
Helix 21
AC3
A
424 426Right-handed 310
Helix 22
AC4
A
427 433Right-handed alpha
Helix 23
AC5
A
433 448Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6FY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
48 50anti-parallel
Strand 3
A
90 93parallel
Strand 4
A
71 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
108 111anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
164 170anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
213 222anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
244 252anti-parallel
Strand 5
A
353 358anti-parallel
Strand 6
A
380 388anti-parallel
Strand 7
A
321 329anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il