Analysis of interatomic Contacts of Structural Units in PDB entry:
6FYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FYF entry

There are 4 chains in PDB entry 6FYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	PRO 461
B	LEU 6	PRO 461
C	LEU 6	PRO 461
D	LEU 6	PRO 461

There are 79 helices in PDB entry 6FYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	18	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	53	68	Right-handed alpha
Helix 4	AA4	A	116	126	Right-handed alpha
Helix 5	AA5	A	140	148	Right-handed alpha
Helix 6	AA6	A	153	158	Right-handed alpha
Helix 7	AA7	A	160	162	Right-handed 310
Helix 8	AA8	A	184	192	Right-handed alpha
Helix 9	AA9	A	225	238	Right-handed alpha
Helix 10	AB1	A	260	264	Right-handed 310
Helix 11	AB2	A	278	288	Right-handed alpha
Helix 12	AB3	A	304	310	Right-handed alpha
Helix 13	AB4	A	333	345	Right-handed alpha
Helix 14	AB5	A	362	366	Right-handed 310
Helix 15	AB6	A	390	392	Right-handed 310
Helix 16	AB7	A	393	408	Right-handed alpha
Helix 17	AB8	A	416	420	Right-handed 310
Helix 18	AB9	A	424	426	Right-handed 310
Helix 19	AC1	A	427	433	Right-handed alpha
Helix 20	AC2	A	433	448	Right-handed alpha
Helix 21	AC3	B	7	18	Right-handed alpha
Helix 22	AC4	B	29	35	Right-handed alpha
Helix 23	AC5	B	53	68	Right-handed alpha
Helix 24	AC6	B	116	126	Right-handed alpha
Helix 25	AC7	B	140	148	Right-handed alpha
Helix 26	AC8	B	153	158	Right-handed alpha
Helix 27	AC9	B	160	162	Right-handed 310
Helix 28	AD1	B	184	192	Right-handed alpha
Helix 29	AD2	B	194	199	Right-handed 310
Helix 30	AD3	B	225	240	Right-handed alpha
Helix 31	AD4	B	278	289	Right-handed alpha
Helix 32	AD5	B	304	312	Right-handed alpha
Helix 33	AD6	B	333	345	Right-handed alpha
Helix 34	AD7	B	361	366	Right-handed alpha
Helix 35	AD8	B	390	392	Right-handed 310
Helix 36	AD9	B	393	408	Right-handed alpha
Helix 37	AE1	B	416	420	Right-handed 310
Helix 38	AE2	B	424	426	Right-handed 310
Helix 39	AE3	B	427	433	Right-handed alpha
Helix 40	AE4	B	433	448	Right-handed alpha
Helix 41	AE5	C	7	18	Right-handed alpha
Helix 42	AE6	C	29	35	Right-handed alpha
Helix 43	AE7	C	53	68	Right-handed alpha
Helix 44	AE8	C	116	126	Right-handed alpha
Helix 45	AE9	C	140	147	Right-handed alpha
Helix 46	AF1	C	153	158	Right-handed alpha
Helix 47	AF2	C	159	162	Right-handed 310
Helix 48	AF3	C	184	192	Right-handed alpha
Helix 49	AF4	C	225	238	Right-handed alpha
Helix 50	AF5	C	260	264	Right-handed 310
Helix 51	AF6	C	278	289	Right-handed alpha
Helix 52	AF7	C	304	312	Right-handed alpha
Helix 53	AF8	C	333	345	Right-handed alpha
Helix 54	AF9	C	361	366	Right-handed alpha
Helix 55	AG1	C	367	371	Right-handed 310
Helix 56	AG2	C	390	392	Right-handed 310
Helix 57	AG3	C	393	409	Right-handed alpha
Helix 58	AG4	C	416	420	Right-handed 310
Helix 59	AG5	C	427	433	Right-handed alpha
Helix 60	AG6	C	433	448	Right-handed alpha
Helix 61	AG7	D	7	18	Right-handed alpha
Helix 62	AG8	D	29	34	Right-handed alpha
Helix 63	AG9	D	53	68	Right-handed alpha
Helix 64	AH1	D	116	126	Right-handed alpha
Helix 65	AH2	D	140	147	Right-handed alpha
Helix 66	AH3	D	153	158	Right-handed alpha
Helix 67	AH4	D	160	162	Right-handed 310
Helix 68	AH5	D	184	192	Right-handed alpha
Helix 69	AH6	D	225	238	Right-handed alpha
Helix 70	AH7	D	260	264	Right-handed 310
Helix 71	AH8	D	278	290	Right-handed alpha
Helix 72	AH9	D	304	312	Right-handed alpha
Helix 73	AI1	D	333	345	Right-handed alpha
Helix 74	AI2	D	390	392	Right-handed 310
Helix 75	AI3	D	393	409	Right-handed alpha
Helix 76	AI4	D	410	412	Right-handed 310
Helix 77	AI5	D	416	420	Right-handed 310
Helix 78	AI6	D	427	433	Right-handed alpha
Helix 79	AI7	D	433	448	Right-handed alpha

There are 16 sheets in PDB entry 6FYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	90	93	parallel
Strand 4	A	71	74	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	200	207	anti-parallel
Strand 4	A	164	170	anti-parallel
Strand 5	A	176	180	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	209	210	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	303	first strand
Strand 2	A	214	222	anti-parallel
Strand 3	A	267	275	anti-parallel
Strand 4	A	244	252	anti-parallel
Strand 5	A	353	358	anti-parallel
Strand 6	A	380	388	anti-parallel
Strand 7	A	321	329	anti-parallel
Strand 8	A	412	413	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	47	50	anti-parallel
Strand 3	B	90	93	parallel
Strand 4	B	71	74	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	200	207	anti-parallel
Strand 4	B	164	170	anti-parallel
Strand 5	B	176	180	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	209	210	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	303	first strand
Strand 2	B	214	222	anti-parallel
Strand 3	B	267	275	anti-parallel
Strand 4	B	244	252	anti-parallel
Strand 5	B	353	358	anti-parallel
Strand 6	B	380	388	anti-parallel
Strand 7	B	321	329	anti-parallel
Strand 8	B	412	413	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	90	93	parallel
Strand 4	C	71	74	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	200	207	anti-parallel
Strand 4	C	164	170	anti-parallel
Strand 5	C	176	180	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	209	210	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	303	first strand
Strand 2	C	214	222	anti-parallel
Strand 3	C	267	275	anti-parallel
Strand 4	C	244	252	anti-parallel
Strand 5	C	353	358	anti-parallel
Strand 6	C	380	388	anti-parallel
Strand 7	C	321	329	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	47	50	anti-parallel
Strand 3	D	90	93	parallel
Strand 4	D	71	74	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	108	112	anti-parallel
Strand 3	D	200	207	anti-parallel
Strand 4	D	164	170	anti-parallel
Strand 5	D	176	180	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	209	210	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	303	first strand
Strand 2	D	214	222	anti-parallel
Strand 3	D	267	275	anti-parallel
Strand 4	D	244	252	anti-parallel
Strand 5	D	353	358	anti-parallel
Strand 6	D	380	388	anti-parallel
Strand 7	D	321	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FYF