Analysis of interatomic Contacts of Structural Units in PDB entry:
6FYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FYJ entry

There is 1 chain in PDB entry 6FYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6FYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
73 78Right-handed alpha
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
90 103Right-handed alpha
Helix 7
AA7
A
106 130Right-handed alpha
Helix 8
AA8
A
136 153Right-handed alpha
Helix 9
AA9
A
157 174Right-handed alpha
Helix 10
AB1
A
178 205Right-handed alpha
Helix 11
AB2
A
214 222Right-handed alpha
Helix 12
AB3
A
231 263Right-handed alpha
Helix 13
AB4
A
263 271Right-handed alpha
Helix 14
AB5
A
274 289Right-handed alpha
Helix 15
AB6
A
320 325Right-handed alpha
Helix 16
AB7
A
337 342Right-handed 310
Helix 17
AB8
A
367 385Right-handed alpha
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There are 3 sheets in PDB entry 6FYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
315 319parallel
Strand 4
A
294 299anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
411 417anti-parallel
Strand 3
A
386 389anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 305first strand
Strand 2
A
308 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il