Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6G0P entry
There are 4 chains in PDB entry 6G0P
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
SER 42 | GLU 167 |
B
|
PRO 115 | GLY 116 |
B
|
GLY 118 | VAL 119 |
B
|
SER 121 | GLY 123 |
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There are 7
helices in PDB entry 6G0P. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 60 |
69 | Right-handed alpha |
Helix 2 |
AA2 | A
| 69 |
77 | Right-handed alpha |
Helix 3 |
AA3 | A
| 80 |
84 | Right-handed 310 |
Helix 4 |
AA4 | A
| 96 |
101 | Right-handed alpha |
Helix 5 |
AA5 | A
| 106 |
116 | Right-handed alpha |
Helix 6 |
AA6 | A
| 121 |
140 | Right-handed alpha |
Helix 7 |
AA7 | A
| 144 |
162 | Right-handed alpha |
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There are no sheets in PDB entry
6G0P
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il