Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G1B entry

There are 3 chains in PDB entry 6G1B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	LYS 4	SER 115
J	LEU 117	ALA 319
B	GLY -2	VAL 323

There are 20 helices in PDB entry 6G1B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	9	23	Right-handed alpha
Helix 2	AA2	J	24	32	Right-handed alpha
Helix 3	AA3	J	35	51	Right-handed alpha
Helix 4	AA4	J	65	90	Right-handed alpha
Helix 5	AA5	J	108	124	Right-handed alpha
Helix 6	AA6	J	135	145	Right-handed alpha
Helix 7	AA7	J	189	196	Right-handed 310
Helix 8	AA8	J	229	239	Right-handed alpha
Helix 9	AA9	J	250	255	Right-handed alpha
Helix 10	AB1	J	285	310	Right-handed alpha
Helix 11	AB2	B	9	23	Right-handed alpha
Helix 12	AB3	B	24	32	Right-handed alpha
Helix 13	AB4	B	35	51	Right-handed alpha
Helix 14	AB5	B	65	90	Right-handed alpha
Helix 15	AB6	B	108	124	Right-handed alpha
Helix 16	AB7	B	135	145	Right-handed alpha
Helix 17	AB8	B	189	196	Right-handed 310
Helix 18	AB9	B	234	244	Right-handed alpha
Helix 19	AC1	B	255	260	Right-handed alpha
Helix 20	AC2	B	290	315	Right-handed alpha

There are 6 sheets in PDB entry 6G1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	55	57	first strand
Strand 2	J	62	64	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	206	208	first strand
Strand 2	J	270	280	anti-parallel
Strand 3	J	162	177	anti-parallel
Strand 4	J	260	263	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	247	first strand
Strand 2	J	162	177	anti-parallel
Strand 3	J	270	280	anti-parallel
Strand 4	J	150	155	anti-parallel
Strand 5	J	98	104	parallel
Strand 6	J	127	133	parallel
Strand 7	B	229	231	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	224	226	first strand
Strand 2	B	127	133	parallel
Strand 3	B	98	104	parallel
Strand 4	B	150	155	parallel
Strand 5	B	275	285	anti-parallel
Strand 6	B	162	177	anti-parallel
Strand 7	B	249	252	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	275	285	anti-parallel
Strand 3	B	162	177	anti-parallel
Strand 4	B	265	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	62	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G1B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1B