Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G1F entry

There are 3 chains in PDB entry 6G1F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ALA 268
A	ALA 270	TRP 443
B	GLY 1	VAL 216

There are116 helices in PDB entry 6G1F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	11	25	Right-handed alpha
Helix 3	AA3	A	26	29	Right-handed 310
Helix 4	AA4	A	31	35	Right-handed 310
Helix 5	AA5	A	75	87	Right-handed alpha
Helix 6	AA6	A	96	110	Right-handed alpha
Helix 7	AA7	A	121	138	Right-handed alpha
Helix 8	AA8	A	153	157	Right-handed 310
Helix 9	AA9	A	173	179	Right-handed alpha
Helix 10	AB1	A	187	199	Right-handed alpha
Helix 11	AB2	A	212	216	Right-handed alpha
Helix 12	AB3	A	220	235	Right-handed alpha
Helix 13	AB4	A	252	259	Right-handed alpha
Helix 14	AB5	A	270	273	Right-handed 310
Helix 15	AB6	A	283	288	Right-handed alpha
Helix 16	AB7	A	289	291	Right-handed 310
Helix 17	AB8	A	307	324	Right-handed alpha
Helix 18	AB9	A	325	348	Right-handed alpha
Helix 19	AC1	A	374	379	Right-handed alpha
Helix 20	AC2	A	386	400	Right-handed alpha
Helix 21	AC3	A	417	438	Right-handed alpha
Helix 22	AC4	B	2	11	Right-handed alpha
Helix 23	AC5	B	11	25	Right-handed alpha
Helix 24	AC6	B	26	29	Right-handed 310
Helix 25	AC7	B	31	35	Right-handed 310
Helix 26	AC8	B	75	87	Right-handed alpha
Helix 27	AC9	B	96	110	Right-handed alpha
Helix 28	AD1	B	121	138	Right-handed alpha
Helix 29	AD2	B	173	179	Right-handed alpha
Helix 30	AD3	B	187	199	Right-handed alpha
Helix 31	AD4	B	212	216	Right-handed alpha
Helix 32	AD5	B	220	235	Right-handed alpha
Helix 33	AD6	B	252	259	Right-handed alpha
Helix 34	AD7	B	270	273	Right-handed 310
Helix 35	AD8	B	283	288	Right-handed alpha
Helix 36	AD9	B	289	291	Right-handed 310
Helix 37	AE1	B	307	324	Right-handed alpha
Helix 38	AE2	B	325	348	Right-handed alpha
Helix 39	AE3	B	374	379	Right-handed alpha
Helix 40	AE4	B	386	400	Right-handed alpha
Helix 41	AE5	B	417	438	Right-handed alpha
Helix 42	AE6	C	3	11	Right-handed alpha
Helix 43	AE7	C	11	25	Right-handed alpha
Helix 44	AE8	C	26	29	Right-handed 310
Helix 45	AE9	C	31	35	Right-handed 310
Helix 46	AF1	C	75	87	Right-handed alpha
Helix 47	AF2	C	96	110	Right-handed alpha
Helix 48	AF3	C	121	138	Right-handed alpha
Helix 49	AF4	C	173	179	Right-handed alpha
Helix 50	AF5	C	187	199	Right-handed alpha
Helix 51	AF6	C	220	235	Right-handed alpha
Helix 52	AF7	C	252	259	Right-handed alpha
Helix 53	AF8	C	270	273	Right-handed 310
Helix 54	AF9	C	283	288	Right-handed alpha
Helix 55	AG1	C	289	291	Right-handed 310
Helix 56	AG2	C	307	324	Right-handed alpha
Helix 57	AG3	C	325	348	Right-handed alpha
Helix 58	AG4	C	374	379	Right-handed alpha
Helix 59	AG5	C	386	400	Right-handed alpha
Helix 60	AG6	C	417	438	Right-handed alpha
Helix 61	AG7	D	2	11	Right-handed alpha
Helix 62	AG8	D	11	25	Right-handed alpha
Helix 63	AG9	D	26	29	Right-handed 310
Helix 64	AH1	D	31	35	Right-handed 310
Helix 65	AH2	D	75	87	Right-handed alpha
Helix 66	AH3	D	96	110	Right-handed alpha
Helix 67	AH4	D	121	138	Right-handed alpha
Helix 68	AH5	D	173	179	Right-handed alpha
Helix 69	AH6	D	187	199	Right-handed alpha
Helix 70	AH7	D	220	235	Right-handed alpha
Helix 71	AH8	D	252	259	Right-handed alpha
Helix 72	AH9	D	270	273	Right-handed 310
Helix 73	AI1	D	285	291	Right-handed 310
Helix 74	AI2	D	307	324	Right-handed alpha
Helix 75	AI3	D	325	348	Right-handed alpha
Helix 76	AI4	D	374	379	Right-handed alpha
Helix 77	AI5	D	386	400	Right-handed alpha
Helix 78	AI6	D	417	438	Right-handed alpha
Helix 79	AI7	E	2	11	Right-handed alpha
Helix 80	AI8	E	11	25	Right-handed alpha
Helix 81	AI9	E	26	29	Right-handed 310
Helix 82	AJ1	E	31	35	Right-handed 310
Helix 83	AJ2	E	75	87	Right-handed alpha
Helix 84	AJ3	E	96	110	Right-handed alpha
Helix 85	AJ4	E	121	138	Right-handed alpha
Helix 86	AJ5	E	173	178	Right-handed alpha
Helix 87	AJ6	E	187	199	Right-handed alpha
Helix 88	AJ7	E	220	234	Right-handed alpha
Helix 89	AJ8	E	252	259	Right-handed alpha
Helix 90	AJ9	E	270	273	Right-handed 310
Helix 91	AK1	E	285	291	Right-handed 310
Helix 92	AK2	E	307	324	Right-handed alpha
Helix 93	AK3	E	325	348	Right-handed alpha
Helix 94	AK4	E	374	379	Right-handed alpha
Helix 95	AK5	E	386	400	Right-handed alpha
Helix 96	AK6	E	417	438	Right-handed alpha
Helix 97	AK7	F	2	11	Right-handed alpha
Helix 98	AK8	F	11	25	Right-handed alpha
Helix 99	AK9	F	26	29	Right-handed 310
Helix 100	AL1	F	31	35	Right-handed 310
Helix 101	AL2	F	75	87	Right-handed alpha
Helix 102	AL3	F	96	110	Right-handed alpha
Helix 103	AL4	F	121	138	Right-handed alpha
Helix 104	AL5	F	153	158	Right-handed alpha
Helix 105	AL6	F	173	179	Right-handed alpha
Helix 106	AL7	F	187	198	Right-handed alpha
Helix 107	AL8	F	220	234	Right-handed alpha
Helix 108	AL9	F	252	259	Right-handed alpha
Helix 109	AM1	F	270	273	Right-handed 310
Helix 110	AM2	F	283	288	Right-handed alpha
Helix 111	AM3	F	289	291	Right-handed 310
Helix 112	AM4	F	307	324	Right-handed alpha
Helix 113	AM5	F	325	348	Right-handed alpha
Helix 114	AM6	F	374	379	Right-handed alpha
Helix 115	AM7	F	386	400	Right-handed alpha
Helix 116	AM8	F	417	437	Right-handed alpha

There are 22 sheets in PDB entry 6G1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	58	61	anti-parallel
Strand 4	A	402	403	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	278	282	anti-parallel
Strand 3	A	264	268	anti-parallel
Strand 4	A	237	241	parallel
Strand 5	A	202	207	parallel
Strand 6	A	141	145	parallel
Strand 7	A	180	183	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	360	365	anti-parallel
Strand 3	A	409	411	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	50	53	anti-parallel
Strand 3	B	58	61	anti-parallel
Strand 4	B	402	403	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	278	282	anti-parallel
Strand 3	B	264	268	anti-parallel
Strand 4	B	237	241	parallel
Strand 5	B	202	207	parallel
Strand 6	B	141	145	parallel
Strand 7	B	180	183	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	360	365	anti-parallel
Strand 3	B	410	411	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	50	53	anti-parallel
Strand 3	C	58	61	anti-parallel
Strand 4	C	402	403	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	278	282	anti-parallel
Strand 3	C	264	268	anti-parallel
Strand 4	C	237	241	parallel
Strand 5	C	202	207	parallel
Strand 6	C	141	145	parallel
Strand 7	C	180	183	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	217	218	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	360	365	anti-parallel
Strand 3	C	409	411	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	50	53	anti-parallel
Strand 3	D	58	61	anti-parallel
Strand 4	D	402	403	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	278	282	anti-parallel
Strand 3	D	264	268	anti-parallel
Strand 4	D	237	241	parallel
Strand 5	D	202	207	parallel
Strand 6	D	141	145	parallel
Strand 7	D	180	183	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	217	218	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	355	first strand
Strand 2	D	360	365	anti-parallel
Strand 3	D	409	411	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	50	53	anti-parallel
Strand 3	E	58	61	anti-parallel
Strand 4	E	402	403	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	278	282	anti-parallel
Strand 3	E	264	268	anti-parallel
Strand 4	E	237	241	parallel
Strand 5	E	202	207	parallel
Strand 6	E	141	145	parallel
Strand 7	E	180	183	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	212	first strand
Strand 2	E	217	218	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	355	first strand
Strand 2	E	360	365	anti-parallel
Strand 3	E	409	411	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	47	first strand
Strand 2	F	50	53	anti-parallel
Strand 3	F	58	61	anti-parallel
Strand 4	F	402	403	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	278	282	anti-parallel
Strand 3	F	264	268	anti-parallel
Strand 4	F	237	241	parallel
Strand 5	F	202	207	parallel
Strand 6	F	141	145	parallel
Strand 7	F	180	183	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	212	first strand
Strand 2	F	217	218	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	357	first strand
Strand 2	F	360	365	anti-parallel
Strand 3	F	409	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G1F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1F