Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G1M entry

There are 4 chains in PDB entry 6G1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ALA 335
B	SER 1	ALA 335
C	SER 1	ALA 335
D	SER 1	ALA 335

There are 56 helices in PDB entry 6G1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	42	47	Right-handed alpha
Helix 3	AA3	A	59	68	Right-handed alpha
Helix 4	AA4	A	79	92	Right-handed alpha
Helix 5	AA5	A	101	105	Right-handed 310
Helix 6	AA6	A	111	125	Right-handed alpha
Helix 7	AA7	A	141	149	Right-handed alpha
Helix 8	AA8	A	169	176	Right-handed alpha
Helix 9	AA9	A	181	191	Right-handed alpha
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	A	269	274	Right-handed 310
Helix 12	AB3	A	298	310	Right-handed alpha
Helix 13	AB4	A	310	317	Right-handed alpha
Helix 14	AB5	A	323	327	Right-handed 310
Helix 15	AB6	B	10	23	Right-handed alpha
Helix 16	AB7	B	42	47	Right-handed alpha
Helix 17	AB8	B	59	68	Right-handed alpha
Helix 18	AB9	B	79	92	Right-handed alpha
Helix 19	AC1	B	101	105	Right-handed 310
Helix 20	AC2	B	111	125	Right-handed alpha
Helix 21	AC3	B	141	149	Right-handed alpha
Helix 22	AC4	B	169	176	Right-handed alpha
Helix 23	AC5	B	181	192	Right-handed alpha
Helix 24	AC6	B	199	212	Right-handed alpha
Helix 25	AC7	B	269	274	Right-handed 310
Helix 26	AC8	B	298	310	Right-handed alpha
Helix 27	AC9	B	310	317	Right-handed alpha
Helix 28	AD1	B	323	327	Right-handed 310
Helix 29	AD2	C	10	23	Right-handed alpha
Helix 30	AD3	C	42	47	Right-handed alpha
Helix 31	AD4	C	59	68	Right-handed alpha
Helix 32	AD5	C	79	92	Right-handed alpha
Helix 33	AD6	C	101	105	Right-handed 310
Helix 34	AD7	C	111	125	Right-handed alpha
Helix 35	AD8	C	141	149	Right-handed alpha
Helix 36	AD9	C	169	176	Right-handed alpha
Helix 37	AE1	C	181	191	Right-handed alpha
Helix 38	AE2	C	199	212	Right-handed alpha
Helix 39	AE3	C	269	274	Right-handed 310
Helix 40	AE4	C	298	310	Right-handed alpha
Helix 41	AE5	C	310	317	Right-handed alpha
Helix 42	AE6	C	323	327	Right-handed 310
Helix 43	AE7	D	10	23	Right-handed alpha
Helix 44	AE8	D	42	47	Right-handed alpha
Helix 45	AE9	D	59	68	Right-handed alpha
Helix 46	AF1	D	79	92	Right-handed alpha
Helix 47	AF2	D	101	105	Right-handed 310
Helix 48	AF3	D	111	125	Right-handed alpha
Helix 49	AF4	D	141	149	Right-handed alpha
Helix 50	AF5	D	169	176	Right-handed alpha
Helix 51	AF6	D	181	191	Right-handed alpha
Helix 52	AF7	D	199	212	Right-handed alpha
Helix 53	AF8	D	269	274	Right-handed 310
Helix 54	AF9	D	298	310	Right-handed alpha
Helix 55	AG1	D	310	317	Right-handed alpha
Helix 56	AG2	D	323	327	Right-handed 310

There are 10 sheets in PDB entry 6G1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	26	32	parallel
Strand 3	A	2	6	parallel
Strand 4	A	71	74	parallel
Strand 5	A	96	99	parallel
Strand 6	A	128	131	parallel
Strand 7	A	320	322	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	226	first strand
Strand 2	A	243	253	anti-parallel
Strand 3	A	258	267	anti-parallel
Strand 4	A	153	164	parallel
Strand 5	A	278	286	anti-parallel
Strand 6	A	289	293	anti-parallel
Strand 7	B	289	293	anti-parallel
Strand 8	B	278	286	anti-parallel
Strand 9	B	153	164	anti-parallel
Strand 10	B	258	267	parallel
Strand 11	B	243	253	anti-parallel
Strand 12	B	217	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	26	32	parallel
Strand 3	B	2	7	parallel
Strand 4	B	71	74	parallel
Strand 5	B	96	99	parallel
Strand 6	B	128	131	parallel
Strand 7	B	320	322	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	26	32	parallel
Strand 3	C	2	7	parallel
Strand 4	C	71	74	parallel
Strand 5	C	96	99	parallel
Strand 6	C	128	131	parallel
Strand 7	C	320	322	parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	226	first strand
Strand 2	C	243	253	anti-parallel
Strand 3	C	258	267	anti-parallel
Strand 4	C	153	164	parallel
Strand 5	C	278	286	anti-parallel
Strand 6	C	289	293	anti-parallel
Strand 7	D	289	293	anti-parallel
Strand 8	D	278	286	anti-parallel
Strand 9	D	153	164	anti-parallel
Strand 10	D	258	267	parallel
Strand 11	D	243	253	anti-parallel
Strand 12	D	217	226	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	27	32	parallel
Strand 3	D	3	6	parallel
Strand 4	D	71	74	parallel
Strand 5	D	96	99	parallel
Strand 6	D	128	131	parallel
Strand 7	D	320	322	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	237	238	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G1M