Analysis of interatomic Contacts of Structural Units in PDB entry:
6G3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G3D entry

There is 1 chain in PDB entry 6G3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6LEU 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6G3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
34 57Right-handed alpha
Helix 3
AA3
A
61 80Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
87 100Right-handed alpha
Helix 6
AA6
A
101 108Right-handed 310
Helix 7
AA7
A
111 148Right-handed alpha
Helix 8
AA8
A
168 194Right-handed alpha
Helix 9
AA9
A
211 219Right-handed alpha
Helix 10
AB1
A
227 234Right-handed alpha
Helix 11
AB2
A
235 263Right-handed alpha
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
289 302Right-handed alpha
Helix 14
AB5
A
302 315Right-handed alpha
Helix 15
AB6
A
328 349Right-handed alpha
Helix 16
AB7
A
352 363Right-handed alpha
Helix 17
AB8
A
366 379Right-handed alpha
Helix 18
AB9
A
381 400Right-handed alpha
Helix 19
AC1
A
402 406Right-handed 310
Helix 20
AC2
A
407 420Right-handed alpha
Helix 21
AC3
A
426 435Right-handed alpha
Helix 22
AC4
A
435 443Right-handed alpha
Helix 23
AC5
A
450 501Right-handed alpha
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There are 3 sheets in PDB entry 6G3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
161 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
223 224parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
350 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il