Analysis of interatomic Contacts of Structural Units in PDB entry:
6G3T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G3T entry

There are 4 chains in PDB entry 6G3T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 266	LYS 397
B	VAL 266	ILE 395
C	VAL 266	PHE 392
D	VAL 266	TYR 394

There are 16 helices in PDB entry 6G3T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	332	334	Right-handed 310
Helix 2	AA2	A	335	343	Right-handed alpha
Helix 3	AA3	A	361	379	Right-handed alpha
Helix 4	AA4	A	382	391	Right-handed alpha
Helix 5	AA5	B	332	334	Right-handed 310
Helix 6	AA6	B	335	343	Right-handed alpha
Helix 7	AA7	B	361	379	Right-handed alpha
Helix 8	AA8	B	382	391	Right-handed alpha
Helix 9	AA9	C	332	334	Right-handed 310
Helix 10	AB1	C	335	343	Right-handed alpha
Helix 11	AB2	C	361	379	Right-handed alpha
Helix 12	AB3	C	382	391	Right-handed alpha
Helix 13	AB4	D	332	334	Right-handed 310
Helix 14	AB5	D	335	343	Right-handed alpha
Helix 15	AB6	D	361	379	Right-handed alpha
Helix 16	AB7	D	382	391	Right-handed alpha

There are 8 sheets in PDB entry 6G3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	306	312	anti-parallel
Strand 3	A	319	323	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	306	312	anti-parallel
Strand 3	A	284	288	anti-parallel
Strand 4	A	273	276	anti-parallel
Strand 5	A	327	329	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	319	323	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	284	288	anti-parallel
Strand 4	B	273	276	anti-parallel
Strand 5	B	327	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	306	312	anti-parallel
Strand 3	C	319	323	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	306	312	anti-parallel
Strand 3	C	284	288	anti-parallel
Strand 4	C	273	276	anti-parallel
Strand 5	C	327	329	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	319	323	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	284	288	anti-parallel
Strand 4	D	273	276	anti-parallel
Strand 5	D	327	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G3T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G3T