Analysis of interatomic Contacts of Structural Units in PDB entry:
6G3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G3U entry

There are 2 chains in PDB entry 6G3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ALA 741
B	SER 5	LEU 740

There are 64 helices in PDB entry 6G3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	33	Right-handed alpha
Helix 2	AA2	A	44	53	Right-handed alpha
Helix 3	AA3	A	54	57	Right-handed 310
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	65	74	Right-handed alpha
Helix 6	AA6	A	90	103	Right-handed alpha
Helix 7	AA7	A	117	131	Right-handed alpha
Helix 8	AA8	A	135	140	Right-handed alpha
Helix 9	AA9	A	149	159	Right-handed alpha
Helix 10	AB1	A	181	186	Right-handed alpha
Helix 11	AB2	A	228	247	Right-handed alpha
Helix 12	AB3	A	261	275	Right-handed alpha
Helix 13	AB4	A	275	282	Right-handed alpha
Helix 14	AB5	A	282	290	Right-handed alpha
Helix 15	AB6	A	292	296	Right-handed 310
Helix 16	AB7	A	297	304	Right-handed alpha
Helix 17	AB8	A	305	307	Right-handed 310
Helix 18	AB9	A	308	323	Right-handed alpha
Helix 19	AC1	A	348	359	Right-handed alpha
Helix 20	AC2	A	379	397	Right-handed alpha
Helix 21	AC3	A	417	424	Right-handed 310
Helix 22	AC4	A	462	480	Right-handed alpha
Helix 23	AC5	A	492	507	Right-handed alpha
Helix 24	AC6	A	520	533	Right-handed alpha
Helix 25	AC7	A	543	560	Right-handed alpha
Helix 26	AC8	A	561	565	Right-handed 310
Helix 27	AC9	A	586	597	Right-handed alpha
Helix 28	AD1	A	603	622	Right-handed alpha
Helix 29	AD2	A	623	643	Right-handed alpha
Helix 30	AD3	A	655	674	Right-handed alpha
Helix 31	AD4	A	677	694	Right-handed alpha
Helix 32	AD5	A	694	704	Right-handed alpha
Helix 33	AD6	A	719	728	Right-handed alpha
Helix 34	AD7	A	730	739	Right-handed alpha
Helix 35	AD8	B	13	33	Right-handed alpha
Helix 36	AD9	B	45	51	Right-handed alpha
Helix 37	AE1	B	66	74	Right-handed alpha
Helix 38	AE2	B	91	103	Right-handed alpha
Helix 39	AE3	B	120	132	Right-handed alpha
Helix 40	AE4	B	135	140	Right-handed alpha
Helix 41	AE5	B	149	159	Right-handed alpha
Helix 42	AE6	B	181	186	Right-handed alpha
Helix 43	AE7	B	228	247	Right-handed alpha
Helix 44	AE8	B	261	275	Right-handed alpha
Helix 45	AE9	B	275	282	Right-handed alpha
Helix 46	AF1	B	282	290	Right-handed alpha
Helix 47	AF2	B	292	296	Right-handed 310
Helix 48	AF3	B	297	304	Right-handed alpha
Helix 49	AF4	B	305	307	Right-handed 310
Helix 50	AF5	B	308	324	Right-handed alpha
Helix 51	AF6	B	348	359	Right-handed alpha
Helix 52	AF7	B	379	397	Right-handed alpha
Helix 53	AF8	B	417	424	Right-handed 310
Helix 54	AF9	B	462	481	Right-handed alpha
Helix 55	AG1	B	492	507	Right-handed alpha
Helix 56	AG2	B	520	533	Right-handed alpha
Helix 57	AG3	B	543	560	Right-handed alpha
Helix 58	AG4	B	603	621	Right-handed alpha
Helix 59	AG5	B	623	643	Right-handed alpha
Helix 60	AG6	B	654	674	Right-handed alpha
Helix 61	AG7	B	677	694	Right-handed alpha
Helix 62	AG8	B	696	702	Right-handed alpha
Helix 63	AG9	B	720	728	Right-handed alpha
Helix 64	AH1	B	733	739	Right-handed alpha

There are 13 sheets in PDB entry 6G3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	7	11	parallel
Strand 3	A	80	83	parallel
Strand 4	A	576	579	parallel
Strand 5	A	566	570	anti-parallel
Strand 6	A	144	147	anti-parallel
Strand 7	A	409	411	anti-parallel
Strand 8	A	539	542	parallel
Strand 9	A	484	487	parallel
Strand 10	A	516	519	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	370	376	parallel
Strand 3	A	249	252	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	370	376	parallel
Strand 3	A	362	364	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	221	227	anti-parallel
Strand 3	A	455	461	anti-parallel
Strand 4	A	426	428	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	216	first strand
Strand 2	A	195	203	anti-parallel
Strand 3	A	433	438	anti-parallel
Strand 4	A	444	450	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	338	339	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	42	first strand
Strand 2	B	6	11	parallel
Strand 3	B	81	82	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	519	first strand
Strand 2	B	484	487	parallel
Strand 3	B	539	542	parallel
Strand 4	B	409	411	parallel
Strand 5	B	144	147	anti-parallel
Strand 6	B	566	568	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	370	376	parallel
Strand 3	B	249	252	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	370	376	parallel
Strand 3	B	362	364	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	221	227	anti-parallel
Strand 3	B	455	461	anti-parallel
Strand 4	B	426	428	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	216	first strand
Strand 2	B	195	203	anti-parallel
Strand 3	B	433	438	anti-parallel
Strand 4	B	444	450	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	338	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G3U