Analysis of interatomic Contacts of Structural Units in PDB entry:
6G42

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G42 entry

There are 5 chains in PDB entry 6G42 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ILE 302
B	LYS 2	ILE 302
C	MET 1	ILE 302
D	MET 1	ILE 302
E	LYS 2	ILE 302

There are 42 helices in PDB entry 6G42. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	20	23	Right-handed 310
Helix 3	AA3	A	63	67	Right-handed 310
Helix 4	AA4	A	101	117	Right-handed alpha
Helix 5	AA5	A	122	126	Right-handed 310
Helix 6	AA6	A	143	149	Right-handed alpha
Helix 7	AA7	A	155	162	Right-handed alpha
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	B	14	19	Right-handed alpha
Helix 10	AB1	B	20	23	Right-handed 310
Helix 11	AB2	B	63	67	Right-handed 310
Helix 12	AB3	B	89	93	Right-handed 310
Helix 13	AB4	B	101	117	Right-handed alpha
Helix 14	AB5	B	122	126	Right-handed 310
Helix 15	AB6	B	143	149	Right-handed alpha
Helix 16	AB7	B	156	162	Right-handed alpha
Helix 17	AB8	B	190	194	Right-handed 310
Helix 18	AB9	C	14	19	Right-handed alpha
Helix 19	AC1	C	20	23	Right-handed 310
Helix 20	AC2	C	63	67	Right-handed 310
Helix 21	AC3	C	101	117	Right-handed alpha
Helix 22	AC4	C	122	126	Right-handed 310
Helix 23	AC5	C	143	149	Right-handed alpha
Helix 24	AC6	C	155	162	Right-handed alpha
Helix 25	AC7	C	190	194	Right-handed 310
Helix 26	AC8	D	14	19	Right-handed alpha
Helix 27	AC9	D	20	23	Right-handed 310
Helix 28	AD1	D	63	67	Right-handed 310
Helix 29	AD2	D	101	117	Right-handed alpha
Helix 30	AD3	D	122	126	Right-handed 310
Helix 31	AD4	D	143	149	Right-handed alpha
Helix 32	AD5	D	155	162	Right-handed alpha
Helix 33	AD6	D	190	195	Right-handed alpha
Helix 34	AD7	E	14	19	Right-handed alpha
Helix 35	AD8	E	20	23	Right-handed 310
Helix 36	AD9	E	63	67	Right-handed 310
Helix 37	AE1	E	89	93	Right-handed 310
Helix 38	AE2	E	101	118	Right-handed alpha
Helix 39	AE3	E	122	126	Right-handed 310
Helix 40	AE4	E	143	149	Right-handed alpha
Helix 41	AE5	E	155	162	Right-handed alpha
Helix 42	AE6	E	190	194	Right-handed 310

There are 35 sheets in PDB entry 6G42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	292	301	anti-parallel
Strand 3	A	45	58	anti-parallel
Strand 4	A	244	250	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	292	301	anti-parallel
Strand 3	A	45	58	anti-parallel
Strand 4	A	259	260	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	268	277	anti-parallel
Strand 3	A	197	203	anti-parallel
Strand 4	A	232	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	268	277	anti-parallel
Strand 3	A	282	284	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	86	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	175	177	anti-parallel
Strand 5	A	167	169	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	183	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	227	228	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	292	301	anti-parallel
Strand 3	B	45	58	anti-parallel
Strand 4	B	244	250	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	292	301	anti-parallel
Strand 3	B	45	58	anti-parallel
Strand 4	B	259	260	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	268	277	anti-parallel
Strand 3	B	197	203	anti-parallel
Strand 4	B	232	235	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	268	277	anti-parallel
Strand 3	B	282	284	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	86	first strand
Strand 2	B	70	75	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	174	177	anti-parallel
Strand 5	B	167	169	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	138	141	anti-parallel
Strand 3	B	183	185	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	227	228	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	292	301	anti-parallel
Strand 3	C	45	58	anti-parallel
Strand 4	C	244	250	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	292	301	anti-parallel
Strand 3	C	45	58	anti-parallel
Strand 4	C	259	260	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	268	277	anti-parallel
Strand 3	C	197	203	anti-parallel
Strand 4	C	232	235	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	268	277	anti-parallel
Strand 3	C	282	284	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	86	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	175	177	anti-parallel
Strand 5	C	167	169	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	183	185	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	227	228	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	11	first strand
Strand 2	D	292	301	anti-parallel
Strand 3	D	45	58	anti-parallel
Strand 4	D	244	250	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	11	first strand
Strand 2	D	292	301	anti-parallel
Strand 3	D	45	58	anti-parallel
Strand 4	D	259	260	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	268	277	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	232	235	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	268	277	anti-parallel
Strand 3	D	282	284	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	86	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	150	154	anti-parallel
Strand 4	D	175	177	anti-parallel
Strand 5	D	167	169	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	183	185	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	213	first strand
Strand 2	D	227	228	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	12	first strand
Strand 2	E	292	301	anti-parallel
Strand 3	E	45	58	anti-parallel
Strand 4	E	244	250	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	12	first strand
Strand 2	E	292	301	anti-parallel
Strand 3	E	45	58	anti-parallel
Strand 4	E	259	260	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	33	first strand
Strand 2	E	268	277	anti-parallel
Strand 3	E	197	203	anti-parallel
Strand 4	E	232	235	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	33	first strand
Strand 2	E	268	277	anti-parallel
Strand 3	E	282	284	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	86	first strand
Strand 2	E	70	75	anti-parallel
Strand 3	E	150	154	anti-parallel
Strand 4	E	175	177	anti-parallel
Strand 5	E	167	169	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	137	141	anti-parallel
Strand 3	E	183	185	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	227	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G42

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G42