Analysis of interatomic Contacts of Structural Units in PDB entry:
6G44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G44 entry

There are 3 chains in PDB entry 6G44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLY 516
B	ASN 2	GLY 516
C	MET -1	GLY 516

There are 45 helices in PDB entry 6G44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	97	102	Right-handed alpha
Helix 3	AA3	A	118	127	Right-handed alpha
Helix 4	AA4	A	131	139	Right-handed alpha
Helix 5	AA5	A	161	165	Right-handed 310
Helix 6	AA6	A	167	171	Right-handed 310
Helix 7	AA7	A	233	237	Right-handed alpha
Helix 8	AA8	A	272	276	Right-handed 310
Helix 9	AA9	A	308	312	Right-handed 310
Helix 10	AB1	A	370	381	Right-handed alpha
Helix 11	AB2	A	386	391	Right-handed alpha
Helix 12	AB3	A	396	402	Right-handed alpha
Helix 13	AB4	A	406	414	Right-handed alpha
Helix 14	AB5	A	425	430	Right-handed 310
Helix 15	AB6	A	492	498	Right-handed alpha
Helix 16	AB7	B	14	18	Right-handed 310
Helix 17	AB8	B	99	103	Right-handed 310
Helix 18	AB9	B	118	127	Right-handed alpha
Helix 19	AC1	B	131	139	Right-handed alpha
Helix 20	AC2	B	161	165	Right-handed 310
Helix 21	AC3	B	167	171	Right-handed 310
Helix 22	AC4	B	233	237	Right-handed alpha
Helix 23	AC5	B	272	276	Right-handed 310
Helix 24	AC6	B	308	312	Right-handed 310
Helix 25	AC7	B	370	381	Right-handed alpha
Helix 26	AC8	B	386	391	Right-handed alpha
Helix 27	AC9	B	396	402	Right-handed alpha
Helix 28	AD1	B	406	414	Right-handed alpha
Helix 29	AD2	B	425	430	Right-handed 310
Helix 30	AD3	B	492	498	Right-handed alpha
Helix 31	AD4	C	14	18	Right-handed 310
Helix 32	AD5	C	97	102	Right-handed alpha
Helix 33	AD6	C	118	127	Right-handed alpha
Helix 34	AD7	C	131	139	Right-handed alpha
Helix 35	AD8	C	161	165	Right-handed 310
Helix 36	AD9	C	167	171	Right-handed 310
Helix 37	AE1	C	233	237	Right-handed alpha
Helix 38	AE2	C	272	276	Right-handed 310
Helix 39	AE3	C	308	312	Right-handed 310
Helix 40	AE4	C	370	381	Right-handed alpha
Helix 41	AE5	C	386	391	Right-handed alpha
Helix 42	AE6	C	396	402	Right-handed alpha
Helix 43	AE7	C	406	414	Right-handed alpha
Helix 44	AE8	C	425	430	Right-handed 310
Helix 45	AE9	C	492	498	Right-handed alpha

There are 27 sheets in PDB entry 6G44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	502	first strand
Strand 2	A	9	12	parallel
Strand 3	B	25	30	parallel
Strand 4	C	512	515	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	502	first strand
Strand 2	C	8	12	parallel
Strand 3	A	25	30	parallel
Strand 4	B	512	515	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	254	266	anti-parallel
Strand 3	A	70	80	anti-parallel
Strand 4	A	191	201	anti-parallel
Strand 5	A	179	182	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	58	first strand
Strand 2	A	224	231	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	113	117	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	238	240	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	285	first strand
Strand 2	A	474	479	anti-parallel
Strand 3	A	484	488	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	300	first strand
Strand 2	A	461	472	anti-parallel
Strand 3	A	330	337	anti-parallel
Strand 4	A	421	424	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	322	324	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	351	359	anti-parallel
Strand 4	A	362	365	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	B	9	12	parallel
Strand 3	C	25	30	parallel
Strand 4	A	512	515	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	254	266	anti-parallel
Strand 3	B	70	80	anti-parallel
Strand 4	B	191	201	anti-parallel
Strand 5	B	179	182	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	113	117	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	268	269	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	238	240	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	285	first strand
Strand 2	B	474	479	anti-parallel
Strand 3	B	484	488	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	301	first strand
Strand 2	B	460	472	anti-parallel
Strand 3	B	330	337	anti-parallel
Strand 4	B	421	424	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	322	324	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	351	359	anti-parallel
Strand 4	B	362	365	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	254	266	anti-parallel
Strand 3	C	70	80	anti-parallel
Strand 4	C	191	201	anti-parallel
Strand 5	C	179	182	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	58	first strand
Strand 2	C	224	231	anti-parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	221	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	268	269	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	238	240	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	285	first strand
Strand 2	C	474	478	anti-parallel
Strand 3	C	484	488	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	301	first strand
Strand 2	C	460	472	anti-parallel
Strand 3	C	330	337	anti-parallel
Strand 4	C	421	424	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	322	324	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	351	359	anti-parallel
Strand 4	C	362	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G44

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G44