Analysis of interatomic Contacts of Structural Units in PDB entry:
6G45

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G45 entry

There are 3 chains in PDB entry 6G45 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	THR 504
B	ASN 2	THR 504
C	ASN 2	THR 504

There are 48 helices in PDB entry 6G45. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	97	102	Right-handed alpha
Helix 3	AA3	A	118	127	Right-handed alpha
Helix 4	AA4	A	131	139	Right-handed alpha
Helix 5	AA5	A	161	165	Right-handed 310
Helix 6	AA6	A	167	171	Right-handed 310
Helix 7	AA7	A	233	237	Right-handed alpha
Helix 8	AA8	A	272	276	Right-handed 310
Helix 9	AA9	A	308	312	Right-handed 310
Helix 10	AB1	A	370	381	Right-handed alpha
Helix 11	AB2	A	386	391	Right-handed alpha
Helix 12	AB3	A	396	402	Right-handed alpha
Helix 13	AB4	A	406	408	Right-handed 310
Helix 14	AB5	A	409	414	Right-handed alpha
Helix 15	AB6	A	425	429	Right-handed 310
Helix 16	AB7	A	492	498	Right-handed alpha
Helix 17	AB8	B	14	18	Right-handed 310
Helix 18	AB9	B	97	102	Right-handed alpha
Helix 19	AC1	B	118	127	Right-handed alpha
Helix 20	AC2	B	131	139	Right-handed alpha
Helix 21	AC3	B	161	165	Right-handed 310
Helix 22	AC4	B	167	171	Right-handed 310
Helix 23	AC5	B	233	237	Right-handed alpha
Helix 24	AC6	B	272	276	Right-handed 310
Helix 25	AC7	B	308	312	Right-handed 310
Helix 26	AC8	B	370	381	Right-handed alpha
Helix 27	AC9	B	386	391	Right-handed alpha
Helix 28	AD1	B	396	402	Right-handed alpha
Helix 29	AD2	B	406	408	Right-handed 310
Helix 30	AD3	B	409	414	Right-handed alpha
Helix 31	AD4	B	425	429	Right-handed 310
Helix 32	AD5	B	492	498	Right-handed alpha
Helix 33	AD6	C	14	18	Right-handed 310
Helix 34	AD7	C	97	102	Right-handed alpha
Helix 35	AD8	C	118	127	Right-handed alpha
Helix 36	AD9	C	131	139	Right-handed alpha
Helix 37	AE1	C	161	165	Right-handed 310
Helix 38	AE2	C	167	171	Right-handed 310
Helix 39	AE3	C	233	237	Right-handed alpha
Helix 40	AE4	C	272	276	Right-handed 310
Helix 41	AE5	C	308	312	Right-handed 310
Helix 42	AE6	C	370	381	Right-handed alpha
Helix 43	AE7	C	386	391	Right-handed alpha
Helix 44	AE8	C	396	402	Right-handed alpha
Helix 45	AE9	C	406	408	Right-handed 310
Helix 46	AF1	C	409	414	Right-handed alpha
Helix 47	AF2	C	425	430	Right-handed 310
Helix 48	AF3	C	492	498	Right-handed alpha

There are 27 sheets in PDB entry 6G45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	A	9	13	parallel
Strand 3	C	501	503	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	C	9	13	parallel
Strand 3	B	501	503	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	254	269	anti-parallel
Strand 3	A	70	80	anti-parallel
Strand 4	A	192	201	anti-parallel
Strand 5	A	179	182	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	254	269	anti-parallel
Strand 3	A	61	65	anti-parallel
Strand 4	A	218	221	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	58	first strand
Strand 2	A	224	231	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	113	117	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	238	240	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	484	488	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	301	first strand
Strand 2	A	460	472	anti-parallel
Strand 3	A	330	337	anti-parallel
Strand 4	A	422	424	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	322	324	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	351	359	anti-parallel
Strand 4	A	362	365	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	B	8	13	parallel
Strand 3	C	26	30	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	254	269	anti-parallel
Strand 3	B	70	80	anti-parallel
Strand 4	B	192	201	anti-parallel
Strand 5	B	179	182	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	254	269	anti-parallel
Strand 3	B	61	65	anti-parallel
Strand 4	B	218	221	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	58	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	113	117	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	238	240	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	285	first strand
Strand 2	B	474	479	anti-parallel
Strand 3	B	484	488	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	301	first strand
Strand 2	B	460	472	anti-parallel
Strand 3	B	330	337	anti-parallel
Strand 4	B	422	424	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	322	324	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	351	359	anti-parallel
Strand 4	B	362	365	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	254	269	anti-parallel
Strand 3	C	70	80	anti-parallel
Strand 4	C	192	201	anti-parallel
Strand 5	C	179	182	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	254	269	anti-parallel
Strand 3	C	61	65	anti-parallel
Strand 4	C	218	221	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	58	first strand
Strand 2	C	224	231	anti-parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	238	240	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	285	first strand
Strand 2	C	474	478	anti-parallel
Strand 3	C	484	488	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	301	first strand
Strand 2	C	460	472	anti-parallel
Strand 3	C	330	337	anti-parallel
Strand 4	C	421	424	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	322	324	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	444	453	anti-parallel
Strand 3	C	351	359	anti-parallel
Strand 4	C	362	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G45

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G45