Analysis of interatomic Contacts of Structural Units in PDB entry:
6G4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G4Q entry

There are 3 chains in PDB entry 6G4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 41GLY 298
A
 ALA 300MET 345
B
 LEU 53ILE 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6G4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 51Right-handed 310
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
103 112Right-handed alpha
Helix 4
AA4
A
121 135Right-handed alpha
Helix 5
AA5
A
148 160Right-handed alpha
Helix 6
AA6
A
187 191Right-handed 310
Helix 7
AA7
A
203 216Right-handed alpha
Helix 8
AA8
A
235 245Right-handed alpha
Helix 9
AA9
A
261 274Right-handed alpha
Helix 10
AB1
A
310 321Right-handed alpha
Helix 11
AB2
A
331 342Right-handed alpha
Helix 12
AB3
B
56 67Right-handed alpha
Helix 13
AB4
B
79 90Right-handed alpha
Helix 14
AB5
B
124 134Right-handed alpha
Helix 15
AB6
B
191 199Right-handed alpha
Helix 16
AB7
B
215 226Right-handed alpha
Helix 17
AB8
B
229 231Right-handed 310
Helix 18
AB9
B
232 250Right-handed alpha
Helix 19
AC1
B
279 285Right-handed 310
Helix 20
AC2
B
287 291Right-handed 310
Helix 21
AC3
B
303 308Right-handed alpha
Helix 22
AC4
B
324 338Right-handed alpha
Helix 23
AC5
B
353 366Right-handed alpha
Helix 24
AC6
B
385 398Right-handed alpha
Helix 25
AC7
B
412 422Right-handed alpha
Helix 26
AC8
B
432 453Right-handed alpha
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There are 8 sheets in PDB entry 6G4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
81 86parallel
Strand 4
A
57 61parallel
Strand 5
A
115 118parallel
Strand 6
A
139 142parallel
Strand 7
A
166 168parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
220 225anti-parallel
Strand 4
A
193 200parallel
Strand 5
A
251 257parallel
Strand 6
A
282 287parallel
Strand 7
A
324 325parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
155 159anti-parallel
Strand 3
B
95 99anti-parallel
Strand 4
B
119 122anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
150 152anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
179 185anti-parallel
Strand 3
B
165 174anti-parallel
Strand 4
B
252 262anti-parallel
Strand 5
B
268 270anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
179 185anti-parallel
Strand 3
B
165 174anti-parallel
Strand 4
B
252 262anti-parallel
Strand 5
B
274 277anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 313first strand
Strand 2
B
344 347anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 322first strand
Strand 2
B
372 378parallel
Strand 3
B
404 409parallel
Strand 4
B
427 430parallel
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