Analysis of interatomic Contacts of Structural Units in PDB entry:
6G4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G4R entry

There are 9 chains in PDB entry 6G4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 4	GLU 21
B	LYS 23	LEU 214
B	ARG 216	VAL 325
A	TYR 6	LEU 214
A	ARG 216	LYS 320
E	GLU 5	GLU 21
E	LYS 23	LYS 320
G	TYR 6	LEU 214
G	ARG 216	GLN 321

There are 43 helices in PDB entry 6G4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	23	Right-handed alpha
Helix 2	AA2	B	27	32	Right-handed alpha
Helix 3	AA3	B	35	51	Right-handed alpha
Helix 4	AA4	B	65	92	Right-handed alpha
Helix 5	AA5	B	108	124	Right-handed alpha
Helix 6	AA6	B	135	145	Right-handed alpha
Helix 7	AA7	B	189	195	Right-handed 310
Helix 8	AA8	B	205	217	Right-handed alpha
Helix 9	AA9	B	222	227	Right-handed alpha
Helix 10	AB1	B	234	244	Right-handed alpha
Helix 11	AB2	B	255	260	Right-handed alpha
Helix 12	AB3	B	290	314	Right-handed alpha
Helix 13	AB4	A	9	22	Right-handed alpha
Helix 14	AB5	A	27	32	Right-handed alpha
Helix 15	AB6	A	35	51	Right-handed alpha
Helix 16	AB7	A	65	90	Right-handed alpha
Helix 17	AB8	A	108	124	Right-handed alpha
Helix 18	AB9	A	135	145	Right-handed alpha
Helix 19	AC1	A	191	196	Right-handed alpha
Helix 20	AC2	A	234	244	Right-handed alpha
Helix 21	AC3	A	255	260	Right-handed alpha
Helix 22	AC4	A	290	314	Right-handed alpha
Helix 23	AC5	E	9	23	Right-handed alpha
Helix 24	AC6	E	24	32	Right-handed alpha
Helix 25	AC7	E	35	51	Right-handed alpha
Helix 26	AC8	E	65	90	Right-handed alpha
Helix 27	AC9	E	108	124	Right-handed alpha
Helix 28	AD1	E	135	145	Right-handed alpha
Helix 29	AD2	E	189	194	Right-handed 310
Helix 30	AD3	E	205	217	Right-handed alpha
Helix 31	AD4	E	234	244	Right-handed alpha
Helix 32	AD5	E	255	260	Right-handed alpha
Helix 33	AD6	E	290	314	Right-handed alpha
Helix 34	AD7	G	9	22	Right-handed alpha
Helix 35	AD8	G	37	51	Right-handed alpha
Helix 36	AD9	G	65	89	Right-handed alpha
Helix 37	AE1	G	90	94	Right-handed 310
Helix 38	AE2	G	108	124	Right-handed alpha
Helix 39	AE3	G	135	145	Right-handed alpha
Helix 40	AE4	G	191	196	Right-handed alpha
Helix 41	AE5	G	234	244	Right-handed alpha
Helix 42	AE6	G	255	260	Right-handed alpha
Helix 43	AE7	G	290	314	Right-handed alpha

There are 10 sheets in PDB entry 6G4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	63	64	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	98	104	parallel
Strand 3	B	150	155	parallel
Strand 4	B	277	285	anti-parallel
Strand 5	B	162	177	anti-parallel
Strand 6	B	249	252	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	98	104	parallel
Strand 3	B	150	155	parallel
Strand 4	B	277	285	anti-parallel
Strand 5	B	162	177	anti-parallel
Strand 6	B	265	268	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	133	first strand
Strand 2	A	98	104	parallel
Strand 3	A	150	154	parallel
Strand 4	A	274	285	anti-parallel
Strand 5	A	162	177	anti-parallel
Strand 6	A	249	252	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	274	285	anti-parallel
Strand 3	A	162	177	anti-parallel
Strand 4	A	265	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	63	64	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	133	first strand
Strand 2	E	98	104	parallel
Strand 3	E	150	154	parallel
Strand 4	E	277	285	anti-parallel
Strand 5	E	162	177	anti-parallel
Strand 6	E	249	252	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	133	first strand
Strand 2	E	98	104	parallel
Strand 3	E	150	154	parallel
Strand 4	E	277	285	anti-parallel
Strand 5	E	162	177	anti-parallel
Strand 6	E	265	268	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	133	first strand
Strand 2	G	98	104	parallel
Strand 3	G	150	155	parallel
Strand 4	G	275	285	anti-parallel
Strand 5	G	162	177	anti-parallel
Strand 6	G	249	252	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	207	208	first strand
Strand 2	G	275	285	anti-parallel
Strand 3	G	162	177	anti-parallel
Strand 4	G	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G4R