Analysis of interatomic Contacts of Structural Units in PDB entry:
6G52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G52 entry

There are 9 chains in PDB entry 6G52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	GLY 543	GLU 726
B	GLY 543	SER 728
C	LYS 545	ASN 727
D	LYS 545	GLU 726
E	GLY 543	MSE 725
F	LYS 545	GLU 726
G	GLY 543	SER 728
H	MSE 544	ASN 727
A	GLY 543	MSE 725

There are 35 helices in PDB entry 6G52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	547	562	Right-handed alpha
Helix 2	AA2	I	571	580	Right-handed alpha
Helix 3	AA3	I	641	645	Right-handed 310
Helix 4	AA4	I	713	724	Right-handed alpha
Helix 5	AA5	B	547	562	Right-handed alpha
Helix 6	AA6	B	563	566	Right-handed 310
Helix 7	AA7	B	571	580	Right-handed alpha
Helix 8	AA8	B	640	645	Right-handed 310
Helix 9	AA9	B	713	728	Right-handed alpha
Helix 10	AB1	C	547	562	Right-handed alpha
Helix 11	AB2	C	571	581	Right-handed alpha
Helix 12	AB3	C	641	645	Right-handed 310
Helix 13	AB4	C	712	725	Right-handed alpha
Helix 14	AB5	D	547	562	Right-handed alpha
Helix 15	AB6	D	571	580	Right-handed alpha
Helix 16	AB7	D	641	645	Right-handed 310
Helix 17	AB8	D	713	725	Right-handed alpha
Helix 18	AB9	E	547	562	Right-handed alpha
Helix 19	AC1	E	571	581	Right-handed alpha
Helix 20	AC2	E	713	724	Right-handed alpha
Helix 21	AC3	F	547	561	Right-handed alpha
Helix 22	AC4	F	571	581	Right-handed alpha
Helix 23	AC5	F	597	599	Right-handed 310
Helix 24	AC6	F	640	645	Right-handed 310
Helix 25	AC7	F	713	725	Right-handed alpha
Helix 26	AC8	G	547	562	Right-handed alpha
Helix 27	AC9	G	571	581	Right-handed alpha
Helix 28	AD1	G	713	725	Right-handed alpha
Helix 29	AD2	H	547	562	Right-handed alpha
Helix 30	AD3	H	571	581	Right-handed alpha
Helix 31	AD4	H	641	645	Right-handed 310
Helix 32	AD5	H	713	726	Right-handed alpha
Helix 33	AD6	A	547	562	Right-handed alpha
Helix 34	AD7	A	571	581	Right-handed alpha
Helix 35	AD8	A	713	725	Right-handed alpha

There are 20 sheets in PDB entry 6G52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	585	588	first strand
Strand 2	I	706	712	anti-parallel
Strand 3	I	611	617	anti-parallel
Strand 4	I	637	639	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	601	603	first strand
Strand 2	I	700	702	anti-parallel
Strand 3	I	620	622	anti-parallel
Strand 4	I	631	633	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	588	first strand
Strand 2	B	706	712	anti-parallel
Strand 3	B	611	617	anti-parallel
Strand 4	B	638	639	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	603	first strand
Strand 2	B	700	702	anti-parallel
Strand 3	B	620	622	anti-parallel
Strand 4	B	631	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	608	first strand
Strand 2	B	695	696	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	588	first strand
Strand 2	C	706	711	anti-parallel
Strand 3	C	612	617	anti-parallel
Strand 4	C	638	639	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	603	first strand
Strand 2	C	700	702	anti-parallel
Strand 3	C	619	622	anti-parallel
Strand 4	C	631	634	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	588	first strand
Strand 2	D	706	712	anti-parallel
Strand 3	D	611	617	anti-parallel
Strand 4	D	638	639	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	603	first strand
Strand 2	D	700	702	anti-parallel
Strand 3	D	620	622	anti-parallel
Strand 4	D	631	633	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	585	588	first strand
Strand 2	E	706	712	anti-parallel
Strand 3	E	611	617	anti-parallel
Strand 4	E	638	639	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	601	603	first strand
Strand 2	E	700	702	anti-parallel
Strand 3	E	620	622	anti-parallel
Strand 4	E	631	633	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	588	first strand
Strand 2	F	706	712	anti-parallel
Strand 3	F	611	617	anti-parallel
Strand 4	F	638	639	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	601	603	first strand
Strand 2	F	700	702	anti-parallel
Strand 3	F	620	622	anti-parallel
Strand 4	F	631	633	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	585	588	first strand
Strand 2	G	706	712	anti-parallel
Strand 3	G	611	617	anti-parallel
Strand 4	G	638	639	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	601	603	first strand
Strand 2	G	699	702	anti-parallel
Strand 3	G	620	624	anti-parallel
Strand 4	G	629	633	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	585	588	first strand
Strand 2	H	706	712	anti-parallel
Strand 3	H	611	617	anti-parallel
Strand 4	H	638	639	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	601	603	first strand
Strand 2	H	699	702	anti-parallel
Strand 3	H	620	624	anti-parallel
Strand 4	H	629	633	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	706	712	anti-parallel
Strand 3	A	611	617	anti-parallel
Strand 4	A	638	639	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	603	first strand
Strand 2	A	700	702	anti-parallel
Strand 3	A	620	622	anti-parallel
Strand 4	A	631	633	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	608	first strand
Strand 2	A	695	696	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G52

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G52