Analysis of interatomic Contacts of Structural Units in PDB entry:
6G5F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G5F entry

There are 2 chains in PDB entry 6G5F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LYS 441
B	ALA 442	GLN 1222

There are 38 helices in PDB entry 6G5F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed 310
Helix 3	AA3	A	81	101	Right-handed alpha
Helix 4	AA4	A	102	115	Right-handed alpha
Helix 5	AA5	A	183	185	Right-handed 310
Helix 6	AA6	A	223	241	Right-handed alpha
Helix 7	AA7	A	265	273	Right-handed alpha
Helix 8	AA8	A	275	280	Right-handed 310
Helix 9	AA9	A	281	306	Right-handed alpha
Helix 10	AB1	A	316	328	Right-handed alpha
Helix 11	AB2	A	341	355	Right-handed alpha
Helix 12	AB3	A	357	366	Right-handed alpha
Helix 13	AB4	A	406	413	Right-handed 310
Helix 14	AB5	A	417	419	Right-handed 310
Helix 15	AB6	B	452	454	Right-handed 310
Helix 16	AB7	B	459	463	Right-handed 310
Helix 17	AB8	B	465	469	Right-handed 310
Helix 18	AB9	B	487	493	Right-handed alpha
Helix 19	AC1	B	536	543	Right-handed alpha
Helix 20	AC2	B	558	565	Right-handed alpha
Helix 21	AC3	B	574	582	Right-handed alpha
Helix 22	AC4	B	586	606	Right-handed alpha
Helix 23	AC5	B	623	629	Right-handed alpha
Helix 24	AC6	B	638	647	Right-handed alpha
Helix 25	AC7	B	648	652	Right-handed 310
Helix 26	AC8	B	674	708	Right-handed alpha
Helix 27	AC9	B	708	741	Right-handed alpha
Helix 28	AD1	B	744	749	Right-handed 310
Helix 29	AD2	B	752	787	Right-handed alpha
Helix 30	AD3	B	787	813	Right-handed alpha
Helix 31	AD4	B	820	832	Right-handed alpha
Helix 32	AD5	B	839	843	Right-handed 310
Helix 33	AD6	B	846	858	Right-handed alpha
Helix 34	AD7	B	859	862	Right-handed 310
Helix 35	AD8	B	941	948	Right-handed alpha
Helix 36	AD9	B	1067	1079	Right-handed alpha
Helix 37	AE1	B	1262	1266	Right-handed 310
Helix 38	AE2	P	37	53	Right-handed alpha

There are 16 sheets in PDB entry 6G5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	191	194	anti-parallel
Strand 3	A	158	161	parallel
Strand 4	A	43	46	parallel
Strand 5	A	34	40	anti-parallel
Strand 6	A	19	23	anti-parallel
Strand 7	A	137	141	anti-parallel
Strand 8	A	151	155	anti-parallel
Strand 9	B	507	508	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	429	430	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	308	309	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	180	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	338	339	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	450	first strand
Strand 2	A	433	438	anti-parallel
Strand 3	B	527	532	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	666	668	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	556	first strand
Strand 2	B	568	570	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1053	1062	anti-parallel
Strand 4	B	898	902	anti-parallel
Strand 5	B	892	893	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1053	1062	anti-parallel
Strand 4	B	926	933	anti-parallel
Strand 5	B	1003	1009	anti-parallel
Strand 6	B	1013	1018	anti-parallel
Strand 7	B	1021	1027	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	884	887	first strand
Strand 2	B	909	912	anti-parallel
Strand 3	B	1039	1046	anti-parallel
Strand 4	B	950	956	anti-parallel
Strand 5	B	961	967	anti-parallel
Strand 6	B	970	976	anti-parallel
Strand 7	B	982	988	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1190	1192	first strand
Strand 2	B	1254	1260	anti-parallel
Strand 3	B	1236	1243	anti-parallel
Strand 4	B	1222	1225	anti-parallel
Strand 5	B	1208	1211	anti-parallel
Strand 6	B	1166	1173	anti-parallel
Strand 7	B	1176	1183	anti-parallel
Strand 8	B	1204	1205	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1194	1197	first strand
Strand 2	B	1176	1183	anti-parallel
Strand 3	B	1166	1173	anti-parallel
Strand 4	B	1144	1149	anti-parallel
Strand 5	B	1097	1102	anti-parallel
Strand 6	B	1280	1283	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1108	1112	first strand
Strand 2	B	1119	1123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G5F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G5F