Analysis of interatomic Contacts of Structural Units in PDB entry:
6G5G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G5G entry

There are 3 chains in PDB entry 6G5G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	SER 439
B	GLY 444	GLU 1291
P	GLN 43	LYS 60

There are 42 helices in PDB entry 6G5G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed 310
Helix 3	AA3	A	81	101	Right-handed alpha
Helix 4	AA4	A	102	115	Right-handed alpha
Helix 5	AA5	A	183	185	Right-handed 310
Helix 6	AA6	A	223	240	Right-handed alpha
Helix 7	AA7	A	265	273	Right-handed alpha
Helix 8	AA8	A	275	280	Right-handed 310
Helix 9	AA9	A	281	306	Right-handed alpha
Helix 10	AB1	A	316	328	Right-handed alpha
Helix 11	AB2	A	341	355	Right-handed alpha
Helix 12	AB3	A	357	365	Right-handed alpha
Helix 13	AB4	A	400	404	Right-handed 310
Helix 14	AB5	A	406	413	Right-handed 310
Helix 15	AB6	A	425	427	Right-handed 310
Helix 16	AB7	B	452	454	Right-handed 310
Helix 17	AB8	B	459	463	Right-handed 310
Helix 18	AB9	B	465	469	Right-handed 310
Helix 19	AC1	B	487	494	Right-handed alpha
Helix 20	AC2	B	536	543	Right-handed alpha
Helix 21	AC3	B	558	565	Right-handed alpha
Helix 22	AC4	B	574	582	Right-handed alpha
Helix 23	AC5	B	586	607	Right-handed alpha
Helix 24	AC6	B	612	616	Right-handed 310
Helix 25	AC7	B	623	629	Right-handed alpha
Helix 26	AC8	B	638	647	Right-handed alpha
Helix 27	AC9	B	648	652	Right-handed 310
Helix 28	AD1	B	674	708	Right-handed alpha
Helix 29	AD2	B	708	739	Right-handed alpha
Helix 30	AD3	B	742	748	Right-handed alpha
Helix 31	AD4	B	752	787	Right-handed alpha
Helix 32	AD5	B	787	813	Right-handed alpha
Helix 33	AD6	B	814	818	Right-handed 310
Helix 34	AD7	B	820	832	Right-handed alpha
Helix 35	AD8	B	839	843	Right-handed 310
Helix 36	AD9	B	846	858	Right-handed alpha
Helix 37	AE1	B	859	862	Right-handed 310
Helix 38	AE2	B	938	940	Right-handed 310
Helix 39	AE3	B	941	948	Right-handed alpha
Helix 40	AE4	B	1067	1080	Right-handed alpha
Helix 41	AE5	B	1261	1267	Right-handed alpha
Helix 42	AE6	P	44	59	Right-handed alpha

There are 17 sheets in PDB entry 6G5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	191	194	anti-parallel
Strand 3	A	158	161	parallel
Strand 4	A	43	46	parallel
Strand 5	A	34	40	anti-parallel
Strand 6	A	19	23	anti-parallel
Strand 7	A	137	142	anti-parallel
Strand 8	A	150	155	anti-parallel
Strand 9	B	507	508	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	429	430	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	308	309	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	180	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	381	383	anti-parallel
Strand 3	A	421	422	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	220	221	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	338	339	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	450	first strand
Strand 2	A	433	437	anti-parallel
Strand 3	B	527	531	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	666	668	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	556	first strand
Strand 2	B	568	570	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1053	1062	anti-parallel
Strand 4	B	898	902	anti-parallel
Strand 5	B	892	893	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	877	first strand
Strand 2	B	864	870	anti-parallel
Strand 3	B	1053	1062	anti-parallel
Strand 4	B	926	933	anti-parallel
Strand 5	B	1003	1009	anti-parallel
Strand 6	B	1013	1018	anti-parallel
Strand 7	B	1021	1027	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	884	887	first strand
Strand 2	B	909	912	anti-parallel
Strand 3	B	1040	1046	anti-parallel
Strand 4	B	949	957	anti-parallel
Strand 5	B	960	967	anti-parallel
Strand 6	B	970	976	anti-parallel
Strand 7	B	982	988	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1190	1192	first strand
Strand 2	B	1252	1260	anti-parallel
Strand 3	B	1234	1246	anti-parallel
Strand 4	B	1222	1226	anti-parallel
Strand 5	B	1208	1211	anti-parallel
Strand 6	B	1166	1173	anti-parallel
Strand 7	B	1176	1183	anti-parallel
Strand 8	B	1204	1205	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1194	1197	first strand
Strand 2	B	1176	1183	anti-parallel
Strand 3	B	1166	1173	anti-parallel
Strand 4	B	1145	1149	anti-parallel
Strand 5	B	1097	1102	anti-parallel
Strand 6	B	1280	1283	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1108	1112	first strand
Strand 2	B	1119	1123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G5G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G5G