Analysis of interatomic Contacts of Structural Units in PDB entry:
6G63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G63 entry

There are 2 chains in PDB entry 6G63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	MET 510
G	MET 1	ARG 148

There are 75 helices in PDB entry 6G63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	73	Right-handed 310
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	144	156	Right-handed alpha
Helix 5	AA5	A	170	173	Right-handed 310
Helix 6	AA6	A	176	201	Right-handed alpha
Helix 7	AA7	A	212	222	Right-handed alpha
Helix 8	AA8	A	233	247	Right-handed alpha
Helix 9	AA9	A	251	254	Right-handed 310
Helix 10	AB1	A	264	269	Right-handed alpha
Helix 11	AB2	A	271	277	Right-handed alpha
Helix 12	AB3	A	314	338	Right-handed alpha
Helix 13	AB4	A	352	369	Right-handed alpha
Helix 14	AB5	A	395	400	Right-handed alpha
Helix 15	AB6	A	415	432	Right-handed alpha
Helix 16	AB7	A	445	452	Right-handed alpha
Helix 17	AB8	A	455	466	Right-handed alpha
Helix 18	AB9	A	498	500	Right-handed 310
Helix 19	AC1	A	501	510	Right-handed alpha
Helix 20	AC2	G	71	73	Right-handed 310
Helix 21	AC3	G	74	78	Right-handed 310
Helix 22	AC4	G	89	93	Right-handed 310
Helix 23	AC5	G	146	158	Right-handed alpha
Helix 24	AC6	G	170	173	Right-handed 310
Helix 25	AC7	G	179	200	Right-handed alpha
Helix 26	AC8	G	214	220	Right-handed alpha
Helix 27	AC9	G	233	247	Right-handed alpha
Helix 28	AD1	G	251	254	Right-handed 310
Helix 29	AD2	G	264	269	Right-handed alpha
Helix 30	AD3	G	271	278	Right-handed alpha
Helix 31	AD4	G	314	338	Right-handed alpha
Helix 32	AD5	G	352	368	Right-handed alpha
Helix 33	AD6	G	415	432	Right-handed alpha
Helix 34	AD7	G	445	452	Right-handed alpha
Helix 35	AD8	G	455	466	Right-handed alpha
Helix 36	AD9	G	498	500	Right-handed 310
Helix 37	AE1	G	501	510	Right-handed alpha
Helix 38	AE2	L	71	73	Right-handed 310
Helix 39	AE3	L	74	78	Right-handed 310
Helix 40	AE4	L	89	93	Right-handed 310
Helix 41	AE5	L	151	158	Right-handed alpha
Helix 42	AE6	L	170	173	Right-handed 310
Helix 43	AE7	L	178	201	Right-handed alpha
Helix 44	AE8	L	214	220	Right-handed alpha
Helix 45	AE9	L	233	247	Right-handed alpha
Helix 46	AF1	L	249	254	Right-handed 310
Helix 47	AF2	L	264	269	Right-handed alpha
Helix 48	AF3	L	271	276	Right-handed alpha
Helix 49	AF4	L	277	279	Right-handed 310
Helix 50	AF5	L	314	338	Right-handed alpha
Helix 51	AF6	L	352	368	Right-handed alpha
Helix 52	AF7	L	395	400	Right-handed alpha
Helix 53	AF8	L	415	432	Right-handed alpha
Helix 54	AF9	L	445	453	Right-handed alpha
Helix 55	AG1	L	455	466	Right-handed alpha
Helix 56	AG2	L	498	500	Right-handed 310
Helix 57	AG3	L	501	510	Right-handed alpha
Helix 58	AG4	N	71	73	Right-handed 310
Helix 59	AG5	N	74	78	Right-handed 310
Helix 60	AG6	N	89	93	Right-handed 310
Helix 61	AG7	N	151	158	Right-handed alpha
Helix 62	AG8	N	170	173	Right-handed 310
Helix 63	AG9	N	179	201	Right-handed alpha
Helix 64	AH1	N	212	222	Right-handed alpha
Helix 65	AH2	N	233	247	Right-handed alpha
Helix 66	AH3	N	251	254	Right-handed 310
Helix 67	AH4	N	264	269	Right-handed alpha
Helix 68	AH5	N	271	277	Right-handed alpha
Helix 69	AH6	N	315	338	Right-handed alpha
Helix 70	AH7	N	352	369	Right-handed alpha
Helix 71	AH8	N	395	400	Right-handed alpha
Helix 72	AH9	N	415	432	Right-handed alpha
Helix 73	AI1	N	445	453	Right-handed alpha
Helix 74	AI2	N	455	466	Right-handed alpha
Helix 75	AI3	N	500	510	Right-handed alpha

There are 24 sheets in PDB entry 6G63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	30	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	4	7	anti-parallel
Strand 4	A	229	231	parallel
Strand 5	A	256	258	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	49	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	66	69	anti-parallel
Strand 4	A	115	117	parallel
Strand 5	A	99	106	anti-parallel
Strand 6	A	41	49	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	127	130	anti-parallel
Strand 3	A	165	168	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	299	305	anti-parallel
Strand 4	A	341	346	parallel
Strand 5	A	384	389	anti-parallel
Strand 6	A	374	376	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	G	412	414	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	G	401	403	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	476	first strand
Strand 2	A	436	444	parallel
Strand 3	A	485	490	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	30	first strand
Strand 2	G	14	20	anti-parallel
Strand 3	G	2	7	anti-parallel
Strand 4	G	226	231	parallel
Strand 5	G	256	258	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	49	first strand
Strand 2	G	55	59	anti-parallel
Strand 3	G	66	69	anti-parallel
Strand 4	G	114	117	parallel
Strand 5	G	99	106	anti-parallel
Strand 6	G	41	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	123	first strand
Strand 2	G	127	130	anti-parallel
Strand 3	G	165	168	anti-parallel
Strand 4	G	138	139	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	284	first strand
Strand 2	G	290	295	anti-parallel
Strand 3	G	300	305	anti-parallel
Strand 4	G	341	346	parallel
Strand 5	G	384	389	anti-parallel
Strand 6	G	374	376	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	470	476	first strand
Strand 2	G	436	444	parallel
Strand 3	G	485	490	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	30	first strand
Strand 2	L	14	20	anti-parallel
Strand 3	L	2	7	anti-parallel
Strand 4	L	226	231	parallel
Strand 5	L	256	258	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	205	208	first strand
Strand 2	L	41	50	anti-parallel
Strand 3	L	99	104	anti-parallel
Strand 4	L	114	117	anti-parallel
Strand 5	L	66	69	parallel
Strand 6	L	55	59	anti-parallel
Strand 7	L	41	50	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	122	123	first strand
Strand 2	L	127	130	anti-parallel
Strand 3	L	165	168	anti-parallel
Strand 4	L	138	139	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	282	284	first strand
Strand 2	L	290	295	anti-parallel
Strand 3	L	299	305	anti-parallel
Strand 4	L	341	346	parallel
Strand 5	L	384	389	anti-parallel
Strand 6	L	374	379	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	401	403	first strand
Strand 2	N	412	414	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	412	414	first strand
Strand 2	N	401	403	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	470	476	first strand
Strand 2	L	436	444	parallel
Strand 3	L	485	490	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	30	first strand
Strand 2	N	14	20	anti-parallel
Strand 3	N	2	7	anti-parallel
Strand 4	N	226	231	parallel
Strand 5	N	256	258	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	205	208	first strand
Strand 2	N	41	50	anti-parallel
Strand 3	N	99	106	anti-parallel
Strand 4	N	115	117	anti-parallel
Strand 5	N	66	69	parallel
Strand 6	N	55	59	anti-parallel
Strand 7	N	41	50	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	122	123	first strand
Strand 2	N	127	130	anti-parallel
Strand 3	N	165	168	anti-parallel
Strand 4	N	138	139	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	282	284	first strand
Strand 2	N	290	295	anti-parallel
Strand 3	N	299	305	anti-parallel
Strand 4	N	341	346	parallel
Strand 5	N	384	389	anti-parallel
Strand 6	N	374	379	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	470	476	first strand
Strand 2	N	436	444	parallel
Strand 3	N	485	490	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G63

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G63