Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6G6J entry
There are 4 chains in PDB entry 6G6J
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
THR 905 | SER 984 |
B
|
ALA 209 | LEU 281 |
C
|
ASN 907 | SER 984 |
D
|
ARG 212 | LEU 281 |
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There are 10
helices in PDB entry 6G6J. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 905 |
926 | Right-handed alpha |
Helix 2 |
AA2 | A
| 938 |
983 | Right-handed alpha |
Helix 3 |
AA3 | B
| 210 |
229 | Right-handed alpha |
Helix 4 |
AA4 | B
| 230 |
233 | Right-handed 310 |
Helix 5 |
AA5 | B
| 238 |
280 | Right-handed alpha |
Helix 6 |
AA6 | C
| 908 |
926 | Right-handed alpha |
Helix 7 |
AA7 | C
| 938 |
983 | Right-handed alpha |
Helix 8 |
AA8 | D
| 213 |
229 | Right-handed alpha |
Helix 9 |
AA9 | D
| 230 |
233 | Right-handed 310 |
Helix 10 |
AB1 | D
| 238 |
281 | Right-handed alpha |
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There are no sheets in PDB entry
6G6J
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il