Analysis of interatomic Contacts of Structural Units in PDB entry:
6G6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G6U entry

There are 2 chains in PDB entry 6G6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 283
B
 ALA 2ALA 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 6G6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 20Right-handed alpha
Helix 3
AA3
B
6 10Right-handed 310
Helix 4
AA4
B
11 20Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6G6U. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 34first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
54 64anti-parallel
Strand 4
A
69 76anti-parallel
Strand 5
A
81 88anti-parallel
Strand 6
A
95 104anti-parallel
Strand 7
A
109 120anti-parallel
Strand 8
A
123 131anti-parallel
Strand 9
A
137 146anti-parallel
Strand 10
A
149 158anti-parallel
Strand 11
A
163 174anti-parallel
Strand 12
A
178 185anti-parallel
Strand 13
A
189 199anti-parallel
Strand 14
A
202 211anti-parallel
Strand 15
A
218 228anti-parallel
Strand 16
A
231 238anti-parallel
Strand 17
A
243 252anti-parallel
Strand 18
A
255 263anti-parallel
Strand 19
A
274 282anti-parallel
Strand 20
A
26 34parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 34first strand
Strand 2
B
39 48anti-parallel
Strand 3
B
54 64anti-parallel
Strand 4
B
69 76anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
95 103anti-parallel
Strand 7
B
111 120anti-parallel
Strand 8
B
123 131anti-parallel
Strand 9
B
137 146anti-parallel
Strand 10
B
149 158anti-parallel
Strand 11
B
163 174anti-parallel
Strand 12
B
178 185anti-parallel
Strand 13
B
189 197anti-parallel
Strand 14
B
202 211anti-parallel
Strand 15
B
218 226anti-parallel
Strand 16
B
231 238anti-parallel
Strand 17
B
243 252anti-parallel
Strand 18
B
255 263anti-parallel
Strand 19
B
274 282anti-parallel
Strand 20
B
26 34parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il