Analysis of interatomic Contacts of Structural Units in PDB entry:
6G6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G6Y entry

There is 1 chain in PDB entry 6G6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6G6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 35Right-handed alpha
Helix 2
AA2
A
77 95Right-handed alpha
Helix 3
AA3
A
110 116Right-handed alpha
Helix 4
AA4
A
126 130Right-handed 310
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
206 227Right-handed alpha
Helix 7
AA7
A
230 235Right-handed alpha
Helix 8
AA8
A
289 304Right-handed alpha
Helix 9
AA9
A
310 313Right-handed 310
Helix 10
AB1
A
314 320Right-handed alpha
Helix 11
AB2
A
321 324Right-handed 310
Helix 12
AB3
A
339 341Right-handed 310
Helix 13
AB4
A
342 357Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6G6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 105parallel
Strand 5
A
255 265parallel
Strand 6
A
236 247anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 105parallel
Strand 5
A
255 265parallel
Strand 6
A
236 247anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
63 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
194 197anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il