Analysis of interatomic Contacts of Structural Units in PDB entry:
6G79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G79 entry

There are 4 chains in PDB entry 6G79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	ASN 340
G	ALA 7	ARG 62
A	LEU 5	TYR 354
S	SER 45	ARG 385

There are 24 helices in PDB entry 6G79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	G	8	24	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	A	6	33	Right-handed alpha
Helix 6	AA6	A	45	54	Right-handed alpha
Helix 7	AA7	A	208	214	Right-handed alpha
Helix 8	AA8	A	215	217	Right-handed 310
Helix 9	AA9	A	230	256	Right-handed alpha
Helix 10	AB1	A	259	263	Right-handed 310
Helix 11	AB2	A	271	282	Right-handed alpha
Helix 12	AB3	A	296	311	Right-handed alpha
Helix 13	AB4	A	331	352	Right-handed alpha
Helix 14	AB5	S	46	77	Right-handed alpha
Helix 15	AB6	S	82	102	Right-handed alpha
Helix 16	AB7	S	102	113	Right-handed alpha
Helix 17	AB8	S	117	153	Right-handed alpha
Helix 18	AB9	S	154	161	Right-handed alpha
Helix 19	AC1	S	162	182	Right-handed alpha
Helix 20	AC2	S	205	216	Right-handed alpha
Helix 21	AC3	S	217	240	Right-handed alpha
Helix 22	AC4	S	306	337	Right-handed alpha
Helix 23	AC5	S	348	373	Right-handed alpha
Helix 24	AC6	S	373	384	Right-handed alpha

There are 8 sheets in PDB entry 6G79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	200	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	243	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	34	40	parallel
Strand 3	A	221	227	parallel
Strand 4	A	264	270	parallel
Strand 5	A	319	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G79

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G79