Analysis of interatomic Contacts of Structural Units in PDB entry:
6G88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G88 entry

There are 2 chains in PDB entry 6G88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 38	LEU 679
B	GLU 38	ASP 95

There are 82 helices in PDB entry 6G88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	58	Right-handed alpha
Helix 2	AA2	A	60	67	Right-handed alpha
Helix 3	AA3	A	79	94	Right-handed alpha
Helix 4	AA4	A	150	154	Right-handed 310
Helix 5	AA5	A	196	200	Right-handed 310
Helix 6	AA6	A	203	216	Right-handed alpha
Helix 7	AA7	A	222	229	Right-handed alpha
Helix 8	AA8	A	267	270	Right-handed 310
Helix 9	AA9	A	271	276	Right-handed alpha
Helix 10	AB1	A	282	289	Right-handed alpha
Helix 11	AB2	A	301	307	Right-handed alpha
Helix 12	AB3	A	307	313	Right-handed alpha
Helix 13	AB4	A	348	359	Right-handed alpha
Helix 14	AB5	A	386	393	Right-handed alpha
Helix 15	AB6	A	395	405	Right-handed alpha
Helix 16	AB7	A	412	416	Right-handed 310
Helix 17	AB8	A	420	423	Right-handed 310
Helix 18	AB9	A	424	435	Right-handed alpha
Helix 19	AC1	A	454	458	Right-handed 310
Helix 20	AC2	A	472	480	Right-handed alpha
Helix 21	AC3	A	481	491	Right-handed alpha
Helix 22	AC4	A	492	502	Right-handed alpha
Helix 23	AC5	A	529	538	Right-handed alpha
Helix 24	AC6	A	546	554	Right-handed alpha
Helix 25	AC7	A	555	559	Right-handed 310
Helix 26	AC8	A	582	599	Right-handed alpha
Helix 27	AC9	A	604	611	Right-handed 310
Helix 28	AD1	A	661	666	Right-handed alpha
Helix 29	AD2	A	666	677	Right-handed alpha
Helix 30	AD3	B	41	58	Right-handed alpha
Helix 31	AD4	B	60	67	Right-handed alpha
Helix 32	AD5	B	79	94	Right-handed alpha
Helix 33	AD6	B	150	154	Right-handed 310
Helix 34	AD7	B	267	270	Right-handed 310
Helix 35	AD8	B	271	276	Right-handed alpha
Helix 36	AD9	B	282	289	Right-handed alpha
Helix 37	AE1	B	301	307	Right-handed alpha
Helix 38	AE2	B	307	313	Right-handed alpha
Helix 39	AE3	B	348	359	Right-handed alpha
Helix 40	AE4	B	386	393	Right-handed alpha
Helix 41	AE5	B	395	405	Right-handed alpha
Helix 42	AE6	B	412	416	Right-handed 310
Helix 43	AE7	B	420	423	Right-handed 310
Helix 44	AE8	B	424	435	Right-handed alpha
Helix 45	AE9	B	454	458	Right-handed 310
Helix 46	AF1	B	472	480	Right-handed alpha
Helix 47	AF2	B	481	491	Right-handed alpha
Helix 48	AF3	B	492	502	Right-handed alpha
Helix 49	AF4	B	529	538	Right-handed alpha
Helix 50	AF5	B	546	554	Right-handed alpha
Helix 51	AF6	B	555	559	Right-handed 310
Helix 52	AF7	B	582	595	Right-handed alpha
Helix 53	AF8	B	604	611	Right-handed 310
Helix 54	AF9	B	661	666	Right-handed alpha
Helix 55	AG1	B	666	677	Right-handed alpha
Helix 56	AG2	C	40	58	Right-handed alpha
Helix 57	AG3	C	60	67	Right-handed alpha
Helix 58	AG4	C	79	94	Right-handed alpha
Helix 59	AG5	C	150	154	Right-handed 310
Helix 60	AG6	C	223	229	Right-handed alpha
Helix 61	AG7	C	267	270	Right-handed 310
Helix 62	AG8	C	271	276	Right-handed alpha
Helix 63	AG9	C	282	289	Right-handed alpha
Helix 64	AH1	C	301	307	Right-handed alpha
Helix 65	AH2	C	307	313	Right-handed alpha
Helix 66	AH3	C	348	359	Right-handed alpha
Helix 67	AH4	C	386	393	Right-handed alpha
Helix 68	AH5	C	395	405	Right-handed alpha
Helix 69	AH6	C	412	416	Right-handed 310
Helix 70	AH7	C	420	423	Right-handed 310
Helix 71	AH8	C	424	435	Right-handed alpha
Helix 72	AH9	C	454	458	Right-handed 310
Helix 73	AI1	C	472	480	Right-handed alpha
Helix 74	AI2	C	481	491	Right-handed alpha
Helix 75	AI3	C	492	502	Right-handed alpha
Helix 76	AI4	C	529	538	Right-handed alpha
Helix 77	AI5	C	546	554	Right-handed alpha
Helix 78	AI6	C	555	559	Right-handed 310
Helix 79	AI7	C	582	599	Right-handed alpha
Helix 80	AI8	C	604	611	Right-handed 310
Helix 81	AI9	C	662	665	Right-handed 310
Helix 82	AJ1	C	666	677	Right-handed alpha

There are 21 sheets in PDB entry 6G88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	110	first strand
Strand 2	A	113	124	anti-parallel
Strand 3	A	127	141	anti-parallel
Strand 4	A	144	147	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	169	first strand
Strand 2	A	316	322	anti-parallel
Strand 3	A	328	335	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	183	195	anti-parallel
Strand 3	A	256	264	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	183	195	anti-parallel
Strand 3	A	176	177	anti-parallel
Strand 4	A	343	344	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	297	299	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	382	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	648	653	anti-parallel
Strand 4	A	634	640	anti-parallel
Strand 5	A	615	621	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	576	577	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	110	first strand
Strand 2	B	113	124	anti-parallel
Strand 3	B	127	141	anti-parallel
Strand 4	B	144	147	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	316	322	anti-parallel
Strand 3	B	328	335	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	264	first strand
Strand 2	B	183	192	anti-parallel
Strand 3	B	176	177	anti-parallel
Strand 4	B	343	344	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	297	299	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	648	653	anti-parallel
Strand 4	B	635	640	anti-parallel
Strand 5	B	615	620	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	576	577	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	110	first strand
Strand 2	C	113	124	anti-parallel
Strand 3	C	127	141	anti-parallel
Strand 4	C	144	147	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	169	first strand
Strand 2	C	316	322	anti-parallel
Strand 3	C	328	335	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	183	195	anti-parallel
Strand 3	C	256	264	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	183	195	anti-parallel
Strand 3	C	176	177	anti-parallel
Strand 4	C	343	344	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	297	299	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	382	first strand
Strand 2	C	364	369	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	635	640	anti-parallel
Strand 5	C	615	620	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	470	471	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	564	first strand
Strand 2	C	576	577	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G88

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G88