Analysis of interatomic Contacts of Structural Units in PDB entry:
6G8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G8V entry

There is 1 chain in PDB entry 6G8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PRO 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6G8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
57 61Right-handed 310
Helix 3
AA3
A
84 104Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
220 238Right-handed alpha
Helix 6
AA6
A
264 271Right-handed alpha
Helix 7
AA7
A
272 276Right-handed 310
Helix 8
AA8
A
279 301Right-handed alpha
Helix 9
AA9
A
302 305Right-handed 310
Helix 10
AB1
A
309 319Right-handed alpha
Helix 11
AB2
A
331 345Right-handed alpha
Helix 12
AB3
A
347 356Right-handed alpha
Helix 13
AB4
A
390 394Right-handed 310
Helix 14
AB5
A
398 402Right-handed 310
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There are 6 sheets in PDB entry 6G8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 150first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
38 44anti-parallel
Strand 5
A
47 53anti-parallel
Strand 6
A
153 157parallel
Strand 7
A
183 186parallel
Strand 8
A
166 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
128 130anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
372 373anti-parallel
Strand 3
A
409 413anti-parallel
Strand 4
A
419 423anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
213 217anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
261 263anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
327 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il