Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G9B entry

There are 2 chains in PDB entry 6G9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31UNK 477
B
 GLU 502VAL 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6G9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
59 61Right-handed 310
Helix 3
AA3
A
71 74Right-handed 310
Helix 4
AA4
A
78 84Right-handed alpha
Helix 5
AA5
A
249 264Right-handed alpha
Helix 6
AA6
B
538 541Right-handed 310
Helix 7
AA7
B
550 552Right-handed 310
Helix 8
AA8
B
553 576Right-handed alpha
Helix 9
AA9
B
583 598Right-handed alpha
Helix 10
AB1
B
612 621Right-handed alpha
Helix 11
AB2
B
622 625Right-handed 310
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There are 6 sheets in PDB entry 6G9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
42 46anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
177 185anti-parallel
Strand 3
A
159 161anti-parallel
Strand 4
A
165 167anti-parallel
Strand 5
A
96 98anti-parallel
Strand 6
B
580 581parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
B
515 520anti-parallel
Strand 3
B
543 548anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
135 144parallel
Strand 3
A
216 223parallel
Strand 4
A
231 237anti-parallel
Strand 5
A
240 243anti-parallel
Strand 6
A
273 275parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
474 477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il