Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G9E entry

There are 4 chains in PDB entry 6G9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 32	GLY 399
B	LYS 32	GLY 399
C	LYS 32	GLY 399
D	LYS 32	LEU 166

There are110 helices in PDB entry 6G9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	46	Right-handed 310
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	88	96	Right-handed alpha
Helix 5	AA5	A	97	99	Right-handed 310
Helix 6	AA6	A	116	123	Right-handed alpha
Helix 7	AA7	A	125	144	Right-handed alpha
Helix 8	AA8	A	156	158	Right-handed 310
Helix 9	AA9	A	159	182	Right-handed alpha
Helix 10	AB1	A	195	203	Right-handed alpha
Helix 11	AB2	A	204	210	Right-handed alpha
Helix 12	AB3	A	243	247	Right-handed 310
Helix 13	AB4	A	250	262	Right-handed alpha
Helix 14	AB5	A	264	266	Right-handed 310
Helix 15	AB6	A	311	319	Right-handed alpha
Helix 16	AB7	A	346	361	Right-handed alpha
Helix 17	AB8	A	391	399	Right-handed alpha
Helix 18	AB9	B	42	46	Right-handed 310
Helix 19	AC1	B	47	51	Right-handed 310
Helix 20	AC2	B	53	57	Right-handed 310
Helix 21	AC3	B	88	95	Right-handed alpha
Helix 22	AC4	B	96	98	Right-handed 310
Helix 23	AC5	B	111	115	Right-handed alpha
Helix 24	AC6	B	116	124	Right-handed alpha
Helix 25	AC7	B	125	143	Right-handed alpha
Helix 26	AC8	B	156	158	Right-handed 310
Helix 27	AC9	B	159	182	Right-handed alpha
Helix 28	AD1	B	195	203	Right-handed alpha
Helix 29	AD2	B	204	209	Right-handed alpha
Helix 30	AD3	B	243	247	Right-handed 310
Helix 31	AD4	B	250	261	Right-handed alpha
Helix 32	AD5	B	264	266	Right-handed 310
Helix 33	AD6	B	311	320	Right-handed alpha
Helix 34	AD7	B	346	361	Right-handed alpha
Helix 35	AD8	B	369	373	Right-handed 310
Helix 36	AD9	B	391	399	Right-handed alpha
Helix 37	AE1	C	42	46	Right-handed 310
Helix 38	AE2	C	47	51	Right-handed 310
Helix 39	AE3	C	53	57	Right-handed 310
Helix 40	AE4	C	88	95	Right-handed alpha
Helix 41	AE5	C	96	99	Right-handed 310
Helix 42	AE6	C	116	124	Right-handed alpha
Helix 43	AE7	C	125	143	Right-handed alpha
Helix 44	AE8	C	156	158	Right-handed 310
Helix 45	AE9	C	159	181	Right-handed alpha
Helix 46	AF1	C	195	203	Right-handed alpha
Helix 47	AF2	C	204	210	Right-handed alpha
Helix 48	AF3	C	243	247	Right-handed 310
Helix 49	AF4	C	250	261	Right-handed alpha
Helix 50	AF5	C	264	266	Right-handed 310
Helix 51	AF6	C	311	320	Right-handed alpha
Helix 52	AF7	C	346	361	Right-handed alpha
Helix 53	AF8	C	392	399	Right-handed alpha
Helix 54	AF9	D	42	46	Right-handed 310
Helix 55	AG1	D	47	51	Right-handed 310
Helix 56	AG2	D	53	57	Right-handed 310
Helix 57	AG3	D	88	96	Right-handed alpha
Helix 58	AG4	D	97	99	Right-handed 310
Helix 59	AG5	D	116	123	Right-handed alpha
Helix 60	AG6	D	125	143	Right-handed alpha
Helix 61	AG7	D	156	158	Right-handed 310
Helix 62	AG8	D	159	182	Right-handed alpha
Helix 63	AG9	D	195	203	Right-handed alpha
Helix 64	AH1	D	204	210	Right-handed alpha
Helix 65	AH2	D	243	247	Right-handed 310
Helix 66	AH3	D	250	261	Right-handed alpha
Helix 67	AH4	D	264	266	Right-handed 310
Helix 68	AH5	D	311	320	Right-handed alpha
Helix 69	AH6	D	346	361	Right-handed alpha
Helix 70	AH7	D	369	373	Right-handed 310
Helix 71	AH8	D	380	384	Right-handed 310
Helix 72	AH9	D	392	399	Right-handed alpha
Helix 73	AI1	E	42	46	Right-handed 310
Helix 74	AI2	E	47	51	Right-handed 310
Helix 75	AI3	E	53	57	Right-handed 310
Helix 76	AI4	E	88	95	Right-handed alpha
Helix 77	AI5	E	96	100	Right-handed 310
Helix 78	AI6	E	116	123	Right-handed alpha
Helix 79	AI7	E	125	143	Right-handed alpha
Helix 80	AI8	E	156	158	Right-handed 310
Helix 81	AI9	E	159	182	Right-handed alpha
Helix 82	AJ1	E	195	203	Right-handed alpha
Helix 83	AJ2	E	204	210	Right-handed alpha
Helix 84	AJ3	E	243	247	Right-handed 310
Helix 85	AJ4	E	250	261	Right-handed alpha
Helix 86	AJ5	E	264	266	Right-handed 310
Helix 87	AJ6	E	311	319	Right-handed alpha
Helix 88	AJ7	E	346	361	Right-handed alpha
Helix 89	AJ8	E	369	373	Right-handed 310
Helix 90	AJ9	E	380	384	Right-handed 310
Helix 91	AK1	E	391	399	Right-handed alpha
Helix 92	AK2	F	42	46	Right-handed 310
Helix 93	AK3	F	47	51	Right-handed 310
Helix 94	AK4	F	53	57	Right-handed 310
Helix 95	AK5	F	88	96	Right-handed alpha
Helix 96	AK6	F	97	99	Right-handed 310
Helix 97	AK7	F	112	115	Right-handed 310
Helix 98	AK8	F	116	123	Right-handed alpha
Helix 99	AK9	F	125	143	Right-handed alpha
Helix 100	AL1	F	156	158	Right-handed 310
Helix 101	AL2	F	159	182	Right-handed alpha
Helix 102	AL3	F	195	203	Right-handed alpha
Helix 103	AL4	F	204	210	Right-handed alpha
Helix 104	AL5	F	243	247	Right-handed 310
Helix 105	AL6	F	250	262	Right-handed alpha
Helix 106	AL7	F	264	266	Right-handed 310
Helix 107	AL8	F	311	320	Right-handed alpha
Helix 108	AL9	F	346	361	Right-handed alpha
Helix 109	AM1	F	380	384	Right-handed 310
Helix 110	AM2	F	391	398	Right-handed alpha

There are 19 sheets in PDB entry 6G9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	64	72	anti-parallel
Strand 3	A	104	111	parallel
Strand 4	A	147	152	parallel
Strand 5	A	187	193	parallel
Strand 6	A	215	218	parallel
Strand 7	A	268	273	parallel
Strand 8	A	364	368	parallel
Strand 9	A	34	40	parallel
Strand 10	A	64	72	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	308	310	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	340	343	anti-parallel
Strand 4	A	332	337	anti-parallel
Strand 5	A	323	327	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	64	68	parallel
Strand 3	B	104	110	parallel
Strand 4	B	147	151	parallel
Strand 5	B	187	192	parallel
Strand 6	B	214	217	parallel
Strand 7	B	268	273	parallel
Strand 8	B	364	368	parallel
Strand 9	B	34	40	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	308	310	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	332	337	anti-parallel
Strand 5	B	323	327	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	64	72	anti-parallel
Strand 3	C	104	110	parallel
Strand 4	C	147	151	parallel
Strand 5	C	187	193	parallel
Strand 6	C	214	218	parallel
Strand 7	C	268	273	parallel
Strand 8	C	364	368	parallel
Strand 9	C	34	40	parallel
Strand 10	C	64	72	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	308	310	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	340	343	anti-parallel
Strand 4	C	332	337	anti-parallel
Strand 5	C	323	327	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	104	111	parallel
Strand 4	D	147	152	parallel
Strand 5	D	187	193	parallel
Strand 6	D	215	218	parallel
Strand 7	D	268	273	parallel
Strand 8	D	364	368	parallel
Strand 9	D	34	40	parallel
Strand 10	D	64	72	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	296	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	308	310	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	296	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	340	343	anti-parallel
Strand 4	D	332	337	anti-parallel
Strand 5	D	323	327	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	64	72	anti-parallel
Strand 3	E	104	110	parallel
Strand 4	E	147	151	parallel
Strand 5	E	187	193	parallel
Strand 6	E	214	218	parallel
Strand 7	E	268	273	parallel
Strand 8	E	364	368	parallel
Strand 9	E	34	40	parallel
Strand 10	E	64	72	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	296	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	308	310	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	296	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	340	343	anti-parallel
Strand 4	E	332	337	anti-parallel
Strand 5	E	323	327	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	64	72	anti-parallel
Strand 3	F	104	110	parallel
Strand 4	F	147	151	parallel
Strand 5	F	187	192	parallel
Strand 6	F	214	217	parallel
Strand 7	F	268	273	parallel
Strand 8	F	364	368	parallel
Strand 9	F	34	40	parallel
Strand 10	F	64	72	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	296	first strand
Strand 2	F	275	281	anti-parallel
Strand 3	F	308	310	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	296	first strand
Strand 2	F	275	281	anti-parallel
Strand 3	F	340	343	anti-parallel
Strand 4	F	332	337	anti-parallel
Strand 5	F	323	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9E