Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6G9P entry

There is 1 chain in PDB entry 6G9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 57LEU 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6G9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 95Right-handed 310
Helix 2
AA2
A
97 110Right-handed alpha
Helix 3
AA3
A
112 125Right-handed alpha
Helix 4
AA4
A
139 149Right-handed alpha
Helix 5
AA5
A
150 153Right-handed 310
Helix 6
AA6
A
168 171Right-handed 310
Helix 7
AA7
A
172 177Right-handed alpha
Helix 8
AA8
A
183 193Right-handed alpha
Helix 9
AA9
A
195 200Right-handed 310
Helix 10
AB1
A
208 214Right-handed alpha
Helix 11
AB2
A
214 220Right-handed alpha
Helix 12
AB3
A
231 233Right-handed 310
Helix 13
AB4
A
255 267Right-handed alpha
Helix 14
AB5
A
294 299Right-handed alpha
Helix 15
AB6
A
302 311Right-handed alpha
Helix 16
AB7
A
319 324Right-handed alpha
Helix 17
AB8
A
328 331Right-handed 310
Helix 18
AB9
A
332 343Right-handed alpha
Helix 19
AC1
A
379 386Right-handed alpha
Helix 20
AC2
A
389 411Right-handed alpha
Helix 21
AC3
A
431 440Right-handed alpha
Helix 22
AC4
A
444 452Right-handed alpha
Helix 23
AC5
A
461 474Right-handed alpha
Helix 24
AC6
A
510 525Right-handed alpha
Helix 25
AC7
A
530 535Right-handed alpha
Helix 26
AC8
A
593 595Right-handed 310
Helix 27
AC9
A
599 613Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6G9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 64first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
235 242anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
78 90anti-parallel
Strand 3
A
156 165anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
78 90anti-parallel
Strand 3
A
71 72anti-parallel
Strand 4
A
250 252parallel
Strand 5
A
484 487anti-parallel
Strand 6
A
494 495anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
204 206anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 289first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
571 578anti-parallel
Strand 5
A
542 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
376 378anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
366 368anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il