Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G9T entry

There are 2 chains in PDB entry 6G9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLN 361
B	LYS 3	GLN 361

There are 34 helices in PDB entry 6G9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	24	Right-handed alpha
Helix 2	AA2	A	65	80	Right-handed alpha
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	98	102	Right-handed 310
Helix 5	AA5	A	105	111	Right-handed alpha
Helix 6	AA6	A	127	137	Right-handed alpha
Helix 7	AA7	A	151	163	Right-handed alpha
Helix 8	AA8	A	164	167	Right-handed 310
Helix 9	AA9	A	169	178	Right-handed alpha
Helix 10	AB1	A	192	199	Right-handed 310
Helix 11	AB2	A	216	222	Right-handed alpha
Helix 12	AB3	A	226	239	Right-handed alpha
Helix 13	AB4	A	245	256	Right-handed alpha
Helix 14	AB5	A	279	287	Right-handed alpha
Helix 15	AB6	A	288	293	Right-handed alpha
Helix 16	AB7	A	330	333	Right-handed 310
Helix 17	AB8	A	345	361	Right-handed alpha
Helix 18	AB9	B	4	24	Right-handed alpha
Helix 19	AC1	B	65	80	Right-handed alpha
Helix 20	AC2	B	88	92	Right-handed 310
Helix 21	AC3	B	98	102	Right-handed 310
Helix 22	AC4	B	105	111	Right-handed alpha
Helix 23	AC5	B	127	137	Right-handed alpha
Helix 24	AC6	B	151	163	Right-handed alpha
Helix 25	AC7	B	164	167	Right-handed 310
Helix 26	AC8	B	169	178	Right-handed alpha
Helix 27	AC9	B	192	199	Right-handed 310
Helix 28	AD1	B	216	222	Right-handed alpha
Helix 29	AD2	B	226	239	Right-handed alpha
Helix 30	AD3	B	245	256	Right-handed alpha
Helix 31	AD4	B	279	287	Right-handed alpha
Helix 32	AD5	B	288	293	Right-handed alpha
Helix 33	AD6	B	330	333	Right-handed 310
Helix 34	AD7	B	345	361	Right-handed alpha

There are 8 sheets in PDB entry 6G9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	37	47	anti-parallel
Strand 3	A	27	34	anti-parallel
Strand 4	A	334	340	anti-parallel
Strand 5	A	322	329	anti-parallel
Strand 6	A	311	319	anti-parallel
Strand 7	A	272	275	anti-parallel
Strand 8	A	265	267	anti-parallel
Strand 9	A	258	262	anti-parallel
Strand 10	A	299	305	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	224	225	anti-parallel
Strand 3	A	187	188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	296	297	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	207	209	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	37	47	anti-parallel
Strand 3	B	27	34	anti-parallel
Strand 4	B	334	340	anti-parallel
Strand 5	B	323	329	anti-parallel
Strand 6	B	311	318	anti-parallel
Strand 7	B	272	275	anti-parallel
Strand 8	B	265	267	anti-parallel
Strand 9	B	258	262	anti-parallel
Strand 10	B	299	305	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	224	225	anti-parallel
Strand 3	B	187	188	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	296	297	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9T