Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6G9V entry

There are 2 chains in PDB entry 6G9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 27	LYS 507
B	PRO 27	LYS 507

There are 51 helices in PDB entry 6G9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	42	Right-handed alpha
Helix 2	AA2	A	44	49	Right-handed 310
Helix 3	AA3	A	50	54	Right-handed 310
Helix 4	AA4	A	55	68	Right-handed alpha
Helix 5	AA5	A	70	83	Right-handed alpha
Helix 6	AA6	A	98	100	Right-handed 310
Helix 7	AA7	A	109	126	Right-handed alpha
Helix 8	AA8	A	147	151	Right-handed 310
Helix 9	AA9	A	160	181	Right-handed alpha
Helix 10	AB1	A	196	207	Right-handed alpha
Helix 11	AB2	A	208	212	Right-handed 310
Helix 12	AB3	A	213	215	Right-handed 310
Helix 13	AB4	A	248	250	Right-handed 310
Helix 14	AB5	A	251	259	Right-handed alpha
Helix 15	AB6	A	260	269	Right-handed alpha
Helix 16	AB7	A	287	297	Right-handed alpha
Helix 17	AB8	A	329	333	Right-handed 310
Helix 18	AB9	A	334	340	Right-handed alpha
Helix 19	AC1	A	363	368	Right-handed alpha
Helix 20	AC2	A	368	373	Right-handed alpha
Helix 21	AC3	A	374	376	Right-handed 310
Helix 22	AC4	A	409	417	Right-handed 310
Helix 23	AC5	A	418	420	Right-handed 310
Helix 24	AC6	A	428	433	Right-handed alpha
Helix 25	AC7	A	446	466	Right-handed alpha
Helix 26	AC8	A	491	495	Right-handed 310
Helix 27	AC9	B	28	42	Right-handed alpha
Helix 28	AD1	B	44	49	Right-handed 310
Helix 29	AD2	B	50	54	Right-handed 310
Helix 30	AD3	B	55	68	Right-handed alpha
Helix 31	AD4	B	70	83	Right-handed alpha
Helix 32	AD5	B	98	100	Right-handed 310
Helix 33	AD6	B	109	126	Right-handed alpha
Helix 34	AD7	B	147	151	Right-handed 310
Helix 35	AD8	B	160	181	Right-handed alpha
Helix 36	AD9	B	193	207	Right-handed alpha
Helix 37	AE1	B	208	212	Right-handed 310
Helix 38	AE2	B	213	215	Right-handed 310
Helix 39	AE3	B	248	250	Right-handed 310
Helix 40	AE4	B	251	259	Right-handed alpha
Helix 41	AE5	B	260	269	Right-handed alpha
Helix 42	AE6	B	287	297	Right-handed alpha
Helix 43	AE7	B	334	340	Right-handed alpha
Helix 44	AE8	B	363	367	Right-handed alpha
Helix 45	AE9	B	368	373	Right-handed alpha
Helix 46	AF1	B	374	376	Right-handed 310
Helix 47	AF2	B	409	417	Right-handed 310
Helix 48	AF3	B	418	420	Right-handed 310
Helix 49	AF4	B	428	433	Right-handed alpha
Helix 50	AF5	B	446	465	Right-handed alpha
Helix 51	AF6	B	491	495	Right-handed 310

There are 13 sheets in PDB entry 6G9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	317	321	anti-parallel
Strand 3	A	324	328	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	422	427	parallel
Strand 3	A	301	307	parallel
Strand 4	A	353	362	anti-parallel
Strand 5	A	272	277	anti-parallel
Strand 6	A	129	134	parallel
Strand 7	A	188	192	parallel
Strand 8	A	217	221	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	244	246	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	403	407	anti-parallel
Strand 3	A	379	383	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	345	349	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	473	first strand
Strand 2	A	498	505	parallel
Strand 3	A	477	480	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	317	321	anti-parallel
Strand 3	B	324	328	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	422	426	parallel
Strand 3	B	301	307	parallel
Strand 4	B	353	362	anti-parallel
Strand 5	B	272	277	anti-parallel
Strand 6	B	129	134	parallel
Strand 7	B	188	192	parallel
Strand 8	B	217	221	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	244	246	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	403	407	anti-parallel
Strand 3	B	379	383	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	241	242	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	472	first strand
Strand 2	B	498	505	parallel
Strand 3	B	477	480	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6G9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6G9V