Analysis of interatomic Contacts of Structural Units in PDB entry:
6GAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GAQ entry

There are 2 chains in PDB entry 6GAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9PHE 154
B
 ALA 9PHE 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6GAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
49 56Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
106 118Right-handed alpha
Helix 7
AA7
A
136 153Right-handed alpha
Helix 8
AA8
B
20 36Right-handed alpha
Helix 9
AA9
B
49 56Right-handed 310
Helix 10
AB1
B
66 70Right-handed 310
Helix 11
AB2
B
74 81Right-handed alpha
Helix 12
AB3
B
106 118Right-handed alpha
Helix 13
AB4
B
136 153Right-handed alpha
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There are 4 sheets in PDB entry 6GAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
11 16parallel
Strand 3
A
58 63parallel
Strand 4
A
91 98parallel
Strand 5
A
122 123parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
11 16parallel
Strand 3
A
58 63parallel
Strand 4
A
91 98parallel
Strand 5
A
128 131parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
10 16parallel
Strand 3
B
58 63parallel
Strand 4
B
91 98parallel
Strand 5
B
122 123parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
10 16parallel
Strand 3
B
58 63parallel
Strand 4
B
91 98parallel
Strand 5
B
128 131parallel
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